# File mse.R
# Part of the hydroGOF R package, https://github.com/hzambran/hydroGOF
# https://cran.r-project.org/package=hydroGOF
# http://www.rforge.net/hydroGOF/ ;
# Copyright 2009-2024 Mauricio Zambrano-Bigiarini
# Distributed under GPL 2 or later
################################################################################
# Author: Mauricio Zambrano-Bigiarini #
################################################################################
# 'mse': Mean Squared Error #
################################################################################
# Started: 03-Feb-2009; 06-Sep-09 #
# Updates: 16-Jan-2023 #
################################################################################
# 'obs' : numeric 'data.frame', 'matrix' or 'vector' with observed values
# 'sim' : numeric 'data.frame', 'matrix' or 'vector' with simulated values
# 'Result': Mean Squared Error between 'sim' and 'obs'
# Ref: Yapo P. O., Gupta H. V., Sorooshian S., 1996.
# Automatic calibration of conceptual rainfall-runoff models:
# sensitivity to calibration data. Journal of Hydrology. v181 i1-4. 23-48.
mse <-function(sim, obs, ...) UseMethod("mse")
mse.default <- function(sim, obs, na.rm=TRUE, fun=NULL, ...,
epsilon.type=c("none", "Pushpalatha2012", "otherFactor", "otherValue"),
epsilon.value=NA){
if ( is.na(match(class(sim), c("integer", "numeric", "ts", "zoo"))) |
is.na(match(class(obs), c("integer", "numeric", "ts", "zoo")))
) stop("Invalid argument type: 'sim' & 'obs' have to be of class: c('integer', 'numeric', 'ts', 'zoo')")
epsilon.type <- match.arg(epsilon.type)
# index of those elements that are present both in 'sim' and 'obs' (NON- NA values)
vi <- valindex(sim, obs)
if (length(vi) > 0) {
# Filtering 'obs' and 'sim', selecting only those pairs of elements
# that are present both in 'x' and 'y' (NON- NA values)
obs <- obs[vi]
sim <- sim[vi]
if (!is.null(fun)) {
fun1 <- match.fun(fun)
new <- preproc(sim=sim, obs=obs, fun=fun1, ...,
epsilon.type=epsilon.type, epsilon.value=epsilon.value)
sim <- new[["sim"]]
obs <- new[["obs"]]
} # IF end
mse <- mean( (sim - obs)^2, na.rm = na.rm)
} else {
mse <- NA
warning("There are no pairs of 'sim' and 'obs' without missing values !")
} # ELSE end
return( mse )
} # 'mse.default' end
################################################################################
# Author: Mauricio Zambrano-Bigiarini #
################################################################################
# Started: 03-Feb-2009; 06-Sep-09 #
# Updates: 16-Jan-2023 #
################################################################################
mse.matrix <- function(sim, obs, na.rm=TRUE, fun=NULL, ...,
epsilon.type=c("none", "Pushpalatha2012", "otherFactor", "otherValue"),
epsilon.value=NA){
# Checking that 'sim' and 'obs' have the same dimensions
if ( all.equal(dim(sim), dim(obs)) != TRUE )
stop( paste("Invalid argument: dim(sim) != dim(obs) ( [",
paste(dim(sim), collapse=" "), "] != [",
paste(dim(obs), collapse=" "), "] )", sep="") )
#mse <- colMeans( (sim - obs)^2, na.rm= na.rm)
mse <- rep(NA, ncol(obs))
mse <- sapply(1:ncol(obs), function(i,x,y) {
mse[i] <- mse.default( x[,i], y[,i], na.rm=na.rm, norm=norm,
fun=fun, ...,
epsilon.type=epsilon.type,
epsilon.value=epsilon.value)
}, x=sim, y=obs )
return(mse)
} # 'mse.matrix' end
################################################################################
# Author: Mauricio Zambrano-Bigiarini #
################################################################################
# Started: 03-Feb-2009; 06-Sep-09 #
# Updates: 16-Jan-2023 #
################################################################################
mse.data.frame <- function(sim, obs, na.rm=TRUE, fun=NULL, ...,
epsilon.type=c("none", "Pushpalatha2012", "otherFactor", "otherValue"),
epsilon.value=NA){
sim <- as.matrix(sim)
obs <- as.matrix(obs)
mse.matrix(sim, obs, na.rm=na.rm, , fun=fun, ...,
epsilon.type=epsilon.type, epsilon.value=epsilon.value)
} # 'mse.data.frame' end
################################################################################
# Author: Mauricio Zambrano-Bigiarini #
################################################################################
# Started: 22-Mar-2013 #
# Updates: 16-Jan-2023 #
################################################################################
mse.zoo <- function(sim, obs, na.rm=TRUE, fun=NULL, ...,
epsilon.type=c("none", "Pushpalatha2012", "otherFactor", "otherValue"),
epsilon.value=NA){
sim <- zoo::coredata(sim)
if (is.zoo(obs)) obs <- zoo::coredata(obs)
if (is.matrix(sim) | is.data.frame(sim)) {
mse.matrix(sim, obs, na.rm=na.rm, ...)
} else NextMethod(sim, obs, na.rm=na.rm, ...)
} # 'mse.zoo' end
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.