In iagomosqueira/mseviz: Plots and Visualization Tools for Management Strategy Evaluation Results

license: Creative Commons Attribution-ShareAlike 4.0 International Public License

library(knitr)
opts_chunk$set(echo=FALSE, message=FALSE, warning=FALSE,
  fig.width=5, fig.height=3, fig.pos='H')

library(mseviz)

Inputs

data(perf)
data(omruns)

Performance levels across MPs

These are the necessary columns in the performance data.frame

• indicator, indicator code
• year
• data, computed value
• iter, iteration number
• name, indicator name
• mp, MP name

perf

Time series of results of MP runs

• mp, MP name
• year
• data, computed value
• iter, iteration number
• qname, computed metric, e.g. Catch (C), mean F (F)

runs

Time series of OM history

• year
• data, computed value
• iter, iteration number
• qname, computed metric, e.g. Catch (C), mean F (F)

om

Standard IOTC MSE plots

plotBPs, indicators boxplots

plotBPs(perf, statistics=c("FMSY", "SBMSY", "green", "risk1"))

plotTOs, trade-off plots

plotTOs(perf, x="C", y=c("FMSY", "SBMSY", "green", "risk1"))

kobeMPs, performance on Kobe plot

kobeMPs(perf)

kobe2MPs,

plotOMruns, time series of OM and MPs

data(omruns)
plotOMruns(om$F, FLQuants(lapply(runs, '[[', 'F')), limit=0.8, target=0.4)

plotOMruns(om$C, FLQuants(lapply(runs, '[[', 'C')), limit=0.8, target=0.4)

IOTC MSE output tables

perftable

fullperftable

References

iagomosqueira/mseviz documentation built on July 7, 2024, 7:27 a.m.