README.md
In imminfo/tcr: Advanced Data Analysis of Immune Receptor Repertoires
tcR
The tcR package is no longer supported and current issues will not be fixed.
A new package is available that is designed to replace tcR called immunarch: https://immunarch.com/
We have solved most of the problems tcR package had and improved the overall pipeline, providing functions for painless repertoire file parsing and publication-ready plot making. We will be happy to help you to integrate the new package into your pipelines. Please do not hesitate to contact us via emails on https://immunarch.com/ or via issues on https://github.com/immunomind/immunarch, should any question arise.
Sincerely, immunarch dev team and Vadim I. Nazarov, lead developer
tcR is a platform designed for TCR and Ig repertoire data analysis in R after preprocessing data with software tools for CDR3 extraction and gene segments aligning (MiTCR, MiXCR, MiGEC, ImmunoSEQ, IMSEQ, etc.). With the power and flexibility of R language and procedures supported by tcR users can perform advanced statistical analysis of TCR and Ig repertoires. The package was published in BMC Bioinformatics, please cite if you use it:
Nazarov et al., tcR: an R package for T cell receptor repertoire advanced data analysis
The project was developed mainly in the Laboratory of Comparative and Functional Genomics.
imminfo/tcr documentation built on June 13, 2020, 7:01 a.m.
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
tcR
The tcR package is no longer supported and current issues will not be fixed.
A new package is available that is designed to replace tcR called immunarch: https://immunarch.com/
We have solved most of the problems tcR package had and improved the overall pipeline, providing functions for painless repertoire file parsing and publication-ready plot making. We will be happy to help you to integrate the new package into your pipelines. Please do not hesitate to contact us via emails on https://immunarch.com/ or via issues on https://github.com/immunomind/immunarch, should any question arise.
Sincerely, immunarch dev team and Vadim I. Nazarov, lead developer
tcR is a platform designed for TCR and Ig repertoire data analysis in R after preprocessing data with software tools for CDR3 extraction and gene segments aligning (MiTCR, MiXCR, MiGEC, ImmunoSEQ, IMSEQ, etc.). With the power and flexibility of R language and procedures supported by tcR users can perform advanced statistical analysis of TCR and Ig repertoires. The package was published in BMC Bioinformatics, please cite if you use it:
Nazarov et al., tcR: an R package for T cell receptor repertoire advanced data analysis
The project was developed mainly in the Laboratory of Comparative and Functional Genomics.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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