Man pages for immune-health/antigen.garnish
Tumor neoantigen prediction
| antigen.garnish | 'antigen.garnish': tumor neoantigen prediction |
| dissimilarity_score | Return dissimilarity (to reference proteome) values for a... |
| foreignness_score | Return foreignness_scores for a vector of peptides. |
| garnish_affinity | Perform neoantigen prediction. |
| garnish_antigens | List top peptides using TESLA criteria for recognition... |
| garnish_variants | Process VCF variants and return a data table for epitope... |
| list_mhc | Return a data table of available MHC types for all prediction... |
