README.md

Accept-reject Markov tree (experimental version)

This package fits the Accept-reject Markov tree (ARM-tree) for comparison between probability distributions. The model is based on a nonparametric process taking the form of a Markov model that transitions between a "reject" and a "accept" state on a multi-resolution partition tree of the sample space. The ARM-tree effectively detect and characterize a variety of underlying differences. These differences can be visualized using several plotting functions.

This is an experimental version under development. I recommend using ARMtre.

Install

The package can be installed on Linux and Mac using devtools:

install.packages('devtools')
library('devtools')
devtools::install_github('ARMtree2', 'jacsor')

Use

There are six functions in this package, and their descriptions are provided in the help files

ans = ARMT(X, G)
summary(ans)
plot1D(ans)
plot2D(ans)
plotTree(ans)
CountTest(G, ...)

Reference

Soriano J. and Ma L. (2014). Multi-resolution two-sample comparison through the divide-merge Markov tree. (http://arxiv.org/abs/1404.3753)



jacsor/ARMtree2 documentation built on May 17, 2017, 6:49 a.m.