Package that interacts with bio and associated projects to permit modelling of ODE, PDE and state space models.

Global functions | |
---|---|

ICA.core | Source code |

ICA.optim | Source code |

NEA_control | Source code |

NEA_storage | Source code |

NEA_structure | Source code |

NEA_throughflow | Source code |

NEA_u_environs | Source code |

NEA_utility | Source code |

Rsquared_glm | Source code |

adapt.core | Source code |

adapt.optim | Source code |

bcratio | Source code |

biomass.logistic | Source code |

biomass.logistic.recursion | Source code |

biomass.logistic.schnute.noequilibrium | Source code |

blasius | Source code |

calculate.biomass | Source code |

check.data | Source code |

cohort.analysis | Source code |

devianceGLM | Source code |

discrete.logistic | Source code |

estimParamsFromCI | Source code |

estimate.bulk.diffusion.coefficient | Source code |

exploitationrate_fishingmortality | Source code |

extract.vpa.solution | Source code |

feeding.relations.initialise | Source code |

find.optim.solution | Source code |

fishingM | Source code |

flow.modes | Source code |

get.vpa.data | Source code |

holling.functional.response | Source code |

jags.setup | Source code |

logistic | Source code |

logistic.timevarying.Kr | Source code |

lotka.volterra.2 | Source code |

lotka.volterra.2D.diffusion | Source code |

lotka.volterra.2D.diffusion.cyclic.boundaries | Source code |

lotka.volterra.matrix | Source code |

lotka.volterra.matrix.logistic.growth | Source code |

model.pde.define.spatial.domain | Source code |

model.pde.external.db | Source code |

model.pde.parameters | Source code |

model.projections | Source code |

ms.adapt.core | Source code |

ms.adapt.optim | Source code |

odds | Source code |

optimize_ml | Source code |

params.ecosystem.structure | Source code |

params.size.taxa | Source code |

params.time | Source code |

params.weights | Source code |

peaks | Source code |

perturb.params | Source code |

perturbation.event | Source code |

phasePlot | Source code |

plot.additional.vpa.results | Source code |

production.biomass.ratio | Source code |

pvalue.rsquare | Source code |

run.simulation | Source code |

sep.VPA.core | Source code |

sep.VPA.optim | Source code |

set_global | Source code |

sim.logistic.data | Source code |

simul.nonstochastic | Source code |

simul.stochastic | Source code |

single.species.2D.logistic | Source code |

specific.excretion | Source code |

specific.growth | Source code |

specific.ingestion | Source code |

specific.respiration | Source code |

sql.find.bio | Source code |

ssa.db | Source code |

ssa.engine | Source code |

ssa.engine.approximation | Source code |

ssa.engine.approximation.rcpp | Source code |

ssa.engine.approximation.snowcrab | Source code |

ssa.engine.exact | Source code |

ssa.model.definition | Source code |

ssa.nonreactive | Source code |

ssa.parallel.run | Source code |

ssa.parameters | Source code |

summary_deviance | Source code |

vonB | Source code |

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