Files in jae0/bio.models
Package that interacts with bio and associated projects to permit modelling of ODE, PDE and state space models.

DESCRIPTION
LICENSE
NAMESPACE
R/ICA.core.r R/ICA.optim.r R/NEA_control.r R/NEA_storage.r R/NEA_structure.r R/NEA_throughflow.r R/NEA_u_environs.r R/NEA_utility.r R/README.md R/adapt.core.r R/adapt.optim.r R/bcratio.r R/biomass.logistic.r R/biomass.logistic.recursion.r R/biomass.logistic.schnute.noequilibrium.r R/biomass_logistic_stan.r R/biomass_logistic_theta_stan.r R/blasius.r R/calculate.biomass.r R/check.data.r R/cohort.analysis.r R/discrete.logistic.r R/estimate.bulk.diffusion.coefficient.r R/extract.vpa.solution.r R/feeding.relations.initialise.r R/find.optim.solution.r R/fishingM.R R/flow.modes.r R/get.vpa.data.r R/holling.functional.response.r R/jags.init.r R/jags.setup.r R/logistic.data.simulator.R R/logistic.r R/logistic.timevarying.Kr.r R/lotka.volterra.2.r R/lotka.volterra.2D.diffusion.cyclic.boundaries.r R/lotka.volterra.2D.diffusion.r R/lotka.volterra.matrix.logistic.growth.r R/lotka.volterra.matrix.r R/misc.r R/model.pde.define.spatial.domain.r R/model.pde.external.db.r R/model.pde.parameters.r R/model.projections.r R/ms.adapt.core.r R/ms.adapt.optim.r R/params.ecosystem.structure.r R/params.size.taxa.r R/params.time.r R/params.weights.r R/peaks.r R/perturbation.event.r R/phasePlot.r R/plot.additional.vpa.results.r R/production.biomass.ratio.r R/run.simulation.r R/sep.VPA.core.r R/sep.VPA.optim.r R/simul.nonstochastic.r R/simul.stochastic.r R/single.species.2D.logistic.r R/specific.excretion.r R/specific.growth.r R/specific.ingestion.r R/specific.respiration.r R/ssa.db.r R/ssa.engine.approximation.r R/ssa.engine.approximation.rcpp.r R/ssa.engine.approximation.snowcrab.r R/ssa.engine.exact.r R/ssa.engine.r R/ssa.model.definition.r R/ssa.nonreactive.r R/ssa.parallel.run.r R/ssa.parameters.r R/surplus_stan.R R/vonB.r README.md inst/README.md inst/doc/README.md
inst/examples/bayesian/AGE-STRUCTURED SEQUENTIAL POPULATION ANALYSIS.bugs
inst/examples/bayesian/delay.difference.r inst/examples/bayesian/functional.anova.inla.r inst/examples/bayesian/geostats.tutorial.r inst/examples/bayesian/growth.snowcrab.r inst/examples/bayesian/inla.r inst/examples/bayesian/inla.statespace.r inst/examples/bayesian/metropolis.hastings.r inst/examples/bayesian/misc.r inst/examples/bayesian/mixtures.r inst/examples/bayesian/mixtures.test.r inst/examples/bayesian/mortality.r inst/examples/bayesian/multinomial.r inst/examples/bayesian/poisson.ancova.jags.r
inst/examples/bayesian/rats.stan
inst/examples/bayesian/rats.txt
inst/examples/bayesian/space.time.inla.r inst/examples/bayesian/stan.r inst/examples/bayesian/surplus.production.bugs.functions.r
inst/examples/bayesian/tuna.surplusproduction.jags
inst/examples/bayesian/vpa.bugs
inst/examples/example.ssa.classical.models.r inst/examples/example.stochastic.simulation.algorithm.gillespie.r inst/examples/example.stochastic.simulation.meanfield.r
inst/examples/msvpa/mohn/codin.txt
inst/examples/msvpa/mohn/vpa.mohn.acon
inst/examples/msvpa/mohn/vpa.mohn.r inst/examples/msvpa/msvpa.ices1996.r
inst/examples/standardised.cpue.data
inst/extdata/standardised.cpue.data
inst/rcpp/random_deviate_exponential.rcpp
inst/rcpp/random_deviate_uniform_weighted.rcpp
inst/rcpp/reaction_locations.rcpp
inst/scripts/NEA.r inst/scripts/README.md inst/scripts/changing.productivity.simulation.R inst/scripts/classical.models.r inst/scripts/logistic.discrete.dbeta_cv.r inst/scripts/logistic.discrete.r inst/scripts/logistic.discrete.testing.r inst/scripts/logistic.discrete.testing2.r inst/scripts/logistic.discrete.v1.r inst/scripts/logistic.discrete.v2_noperturbation.r inst/scripts/logistic.discrete.working.r inst/scripts/markov.r inst/scripts/model.pde.simple.r inst/scripts/model.pde.snowcrab.r inst/scripts/ssa.r inst/scripts/ssa.snowcrab.r
inst/scripts/standardised.cpue.data
inst/scripts/standardised.cpue.r
inst/scripts/stock.recruit.data
inst/scripts/stock.recruit.r inst/scripts/surplus.production.r inst/scripts/vpa.r
inst/testing/Rcpp.tests
inst/testing/ssa.engine.approximation.rcpp_direct.r inst/testing/ssa.engine.approximation.snowcrab_particletracking.r
src/LaplacesDemon.cpp
src/LaplacesDemon.h
src/Makevars
src/Makevars.win
src/Matrices.cpp
src/Matrices.h
src/distributions.cpp
src/distributions.h
src/interval.cpp
src/interval.h
vignettes/README.md vignettes/example.Rmd
jae0/bio.models documentation built on Nov. 22, 2017, 1:22 a.m.