Files in jae0/bio.snowcrab
Snow crab assessment suite for em* and associated projects.

DESCRIPTION
LICENSE
NAMESPACE
R/CW.interval.male.r R/LDx.core.r R/LDx.r R/ZIMgamma.R R/adjust.depth.for.drift.r R/aggregated.fish.stats.r R/allometry.snowcrab.r R/biomass.summary.db.r R/bodysize.r R/choose.transition.matrix.r R/clean.surface.area.r R/colour.palettes.r R/compute.proportions.r R/convert.graphics.format.r R/convert.to.vector.r R/convert2factor.r R/create.histograms.yearly.r R/create.projection.summary.r R/cummulative.landings.r R/data.quality.check.r R/decibar2depth.r R/decompose.into.sets.r R/delury.leslie.r R/determine.origin.r R/effects.data.export.r R/eggdata.r R/ellipse.2d.r R/empirical.ranges.r R/error.propagate.r R/errorbars.r R/esonarconversion.R R/est.size.at.maturity.r R/estimate.biomass.r R/estimate.number.r R/expand.weights.r R/exploitationrates.r R/export.to.clipboard.r R/export.to.shapefile.r R/extract.solution.r R/extract.summary.data.for.one.variable.r R/fb.r R/fecundity.allometric.r R/fecundity.indirect.r R/figure.cpue.timeseries.r R/figure.crab.groundfish.survey.r R/figure.effort.timeseries.r R/figure.exploitation.rate.r R/figure.growth.instar.r R/figure.immature.male.r R/figure.immature.skipmoulter.male.r R/figure.interpolated.results.r R/figure.landings.timeseries.r R/figure.mature.CC12.male.r R/figure.mature.CC34.male.r R/figure.mature.CC5.male.r R/figure.mcmc.r R/figure.observed.size.freq.r R/figure.timeseries.bycatch.r R/figure.timeseries.errorbars.r R/figure.timeseries.interpolated.r R/figure.timeseries.larvae.r R/figure.timeseries.snowcrab.habitat.r R/figure.timeseries.snowcrab.habitat.temperatures.r R/figure.timeseries.survey.r R/figure.timeseries.surveyindex.fishablebiomass.R R/filter.class.r R/filter.durometer.r R/filter.eggPr.r R/filter.independent.variables.r R/filter.mat.r R/filter.prediction.locations.r R/filter.region.r R/filter.season.r R/filter.set.r R/filter.sex.r R/filter.shell.r R/filter.size.r R/filter.stage.fmat.r R/filter.towquality.r R/fishery.model.jags.r R/fishery.stats.by.region.r R/fishery_model.r R/fishing.area.designations.r R/format.crude.odds.r R/get.annual.timeseries.r R/get.cohort.data.r R/get.effects.from.model.r R/get.fishery.stats.by.region.r R/get.hist.data.r R/get.main.effects.r R/get.marked.r R/get.move.r R/get.population.projection.parameters.r R/get.rawdata.historical.r R/get.recaps.r R/get.stepwise.model.results.r R/get.structured.data.r R/graphics.convert.r R/grid.logbook.r R/gridSets.r R/habitat.template.lookup.r R/habitat.usage.r R/hist.legal.r R/histogram_with_kernel.r R/histograms.size.maturity.r R/histograms.size.maturity.single.area.r R/histograms.size.maturity.update.r R/inflection.pt.r R/interpolate.missing.xyz.r R/interpolation.db.r R/inverse.logit.r R/isEsonar.r R/jackknifeCPUE.r R/jags.extract.r R/landings.aggregate.r R/landings.db.r R/landings.decomposed.r R/load.environment.r R/load.minilog.rawdata.one.file.per.day.r R/load.minilog.rawdata.r R/load.netmind.rawdata.r R/load.seabird.rawdata.r R/logbook.db.r R/logbook.determine.region.r R/logbook.fisheries.stats.merge.r R/logbook.prorate.r R/logistic.display.local.r R/lookup.biomass.vars.r R/lookup.numbers.vars.r R/make.classes.r R/make.evenness.spatial.r R/make.fisheries.ts.r R/make.hist.r R/make.histograms.r R/make.maturity.spatial.r R/make.mortality.r R/makeMap.r R/makePBS.r R/map.basemap.with.cfa.lines.r R/map.cfas.r R/map.fisheries.data.r R/map.larval.distributions.r R/map.logbook.locations.r R/map.maturity.r R/map.movement.r R/map.observer.locations.r R/map.set.information.r R/map.survey.locations.r R/map.temperatures.r R/matrix.form.r R/mb.r R/mean.weights.by.category.r R/minilog.db.r R/minilogDate.r R/net.configuration.r R/netmind.db.r R/netmindDate.r R/no.grid.logbook.r R/nodes2matrix.r R/observer.compute.fisheries.exploitation.r R/observer.data.formats.r R/observer.db.r R/observer.get.counts.by.class.r R/observer.historical.data.concatenate.r R/observer.historical.data.r R/observer.load.rawdata.r R/offset.ageclass.r R/offset.time.r R/ordinate.r R/plot.freq.distribution.prior.posterior.r R/plot.projections.r R/predict.mass.g.from.CW.mm.r R/predict.maturity.males.r R/predictmaturity.r R/predictweights.r R/prep.maturity.data.r R/projected.exploitation.rate.r R/proportion.cc.r R/proportion.legal.r R/proportion.soft.r R/range.cap.r R/recode.time.maturity.r R/recode.time.r R/region.decompose.r R/regrid.lonlat.r R/remove.na.r R/removeDuplicateswithNA.r R/rename.bio.snowcrab.variables.r R/rename.df.r R/rescale.min.max.r R/seabird.db.r R/seabirdDate.r R/setmerge.r R/setup.lattice.options.r R/sex.ratios.r R/sim.markov.r R/size.at.maturity.r R/snowcrab.db.r R/snowcrab.lookup.mapparams.R R/snowcrab.lookupnames.r R/snowcrab.parameters.R R/snowcrab.timeseries.db.r R/snowcrab.variablelist.R R/snowcrab_stmv.R R/subset.biomass.r R/sum.data.r R/tab.4.tex.r R/table.view.r R/tagging.example.usage.r R/tapply2.r R/transition.matrices.r R/trimWhiteSpace.r R/tripcode.to.timestamp.r R/ts.collapse.r R/ts.data.r R/ts.landings.and.tacs.r R/ts.plotandsave.r R/unadjusted.odds.r R/variable.recode.r R/zeroInflate.r README.md
inst/bugs/biomassdynamic.bugs
inst/bugs/biomassdynamic.illegal.bugs
inst/bugs/biomassdynamic_01_02_2012.bug
inst/bugs/biomassdynamic_08_01_2012.bugs
inst/bugs/biomassdynamic_10_01_2012.bugs
inst/bugs/biomassdynamic_15_01_2012.bugs
inst/bugs/biomassdynamic_17_01_2012.bugs
inst/bugs/biomassdynamic_18_01_2012.bugs
inst/bugs/biomassdynamic_19_01_2012.bugs
inst/bugs/biomassdynamic_2010.bugs
inst/bugs/biomassdynamic_2011.bugs
inst/bugs/biomassdynamic_2012.bugs
inst/bugs/biomassdynamic_2012_02_17.bugs
inst/bugs/biomassdynamic_2012_02_18.bugs
inst/bugs/biomassdynamic_2012_02_21.bugs
inst/bugs/biomassdynamic_2012a.bugs
inst/bugs/biomassdynamic_2013_02_17.bugs
inst/bugs/biomassdynamic_2013_candidate.bugs
inst/bugs/biomassdynamic_21_01_2012.bugs
inst/bugs/biomassdynamic_basic_2013.bugs
inst/bugs/biomassdynamic_basic_2014.bugs
inst/bugs/biomassdynamic_full_2013.bugs
inst/bugs/biomassdynamic_illegal_2013.bugs
inst/bugs/biomassdynamic_nonhyper_2014.bugs
inst/bugs/biomassdynamic_nonhyper_2016.bugs
inst/bugs/biomassdynamic_recruitment_2013.bugs
inst/bugs/biomassdynamic_simple.2012.bugs
inst/bugs/biomassdynamic_working.bugs
inst/bugs/delaydifference.bugs
inst/bugs/delaydifference.illegal.bugs
inst/papers/egg.maturation.r inst/papers/paper.alaska.habitat.r inst/requests/4x.interim.figs.2015.r inst/requests/4xpaper.catch.rates.survey.catches.r inst/requests/ben_maturity_extraction.r inst/requests/catchratesbyMLstationsNENS.r inst/requests/cfa4x.early.season.catch.rates.r inst/requests/cfanorth.counts.r inst/requests/extract.temperature.r inst/requests/landings.by.polygon.r inst/requests/nens.landings.premay15.r inst/requests/requests.r inst/requests/save.set.complete.shapefile.r inst/requests/stannsbank.survey.stations.r inst/requests/surveryInterpolation.r inst/requests/vps.tagging.movement.classification.r inst/scripts/01.snowcrab.r inst/scripts/02.figures_tables.r inst/scripts/03.abundance.estimation.r inst/scripts/04.figures_tables.r inst/scripts/05.fisherymodel.R inst/scripts/11.4X.Advisory.Presentation.r inst/scripts/13.Emera.Tagging.r inst/scripts/13.otn.tagging.r inst/scripts/99.BCFC.r inst/scripts/README.md
inst/sql/db.marfis/crab2_pro_rated.sql
inst/sql/db.observer/crt_view_crabdetails.sql
inst/sql/db.observer/crt_view_sncrabsets.sql
inst/sql/db.observer/crt_view_sntrawlbycatch.sql
inst/sql/db.observer/observer.bycatches.sql
inst/sql/db.observer/smple_sql.sql
inst/sql/db.snowcrab/cleanup.bash
inst/sql/db.snowcrab/createTables.sql
inst/sql/db.snowcrab/extract.from.oracle.sql
inst/sql/db.snowcrab/test.sql
inst/tex/4x_advisory.tex
inst/tex/NENS PreRap.tex
inst/tex/Older/2015_4x_advisory.tex
inst/tex/Older/2016_4x_advisory.tex
inst/tex/RAP.2018.Assessment.tex
inst/tex/RAP.2018.Fishery Presentation.tex
inst/tex/RAP.Presentation.Assessment.tex
inst/tex/RAP.tex
inst/tex/RapFigures.tex
inst/tex/ReportInterim4X.tex
inst/tex/ResDoc.tex
inst/tex/variablenames.tex
jae0/bio.snowcrab documentation built on June 9, 2018, 3:21 p.m.