jae0/snowcrab
Snow crab assessment suite for aegis* and associated projects.

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235
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287
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jae0/snowcrab: Snow crab assessment suite for aegis* and associated projects.
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API

API for jae0/snowcrab
Snow crab assessment suite for aegis* and associated projects.

Global functions
CA.checkMatch Source code
CA.getTable Source code
CA.insertCDDcsv Source code
CA.insertTAC Source code
CA.insertVariables Source code
CA.removeTAC Source code
CA.writeAreaContributions Source code
CA.writeIndividualContributions Source code
CA.writePartnerContributions Source code
CW.interval.male Source code
LDx Source code
ZIMgamma Source code
addVMSTrack Source code
adjust.depth.for.drift Source code
aggregate_by Source code
aggregate_simulations Source code
allometry.snowcrab Source code
biomass.summary.table Source code
bodysize Source code
carstm_estimation_runtypes Source code
choose.transition.matrix Source code
code_to_taxa Source code
compute.proportions Source code
convert.to.vector Source code
convert2factor Source code
cpue.aggregate Source code
create.histograms.yearly Source code
create.projection.summary Source code
cummulative.landings Source code
cw_to_instar Source code
data.quality.check Source code
decibar2depth Source code
decompose.into.sets Source code
delury.leslie Source code
determine.origin Source code
effects.data.export Source code
eggdata Source code
ellipse.2d Source code
empirical.ranges Source code
error.propagate Source code
errorbars Source code
esonar2netmind Source code
est.size.at.maturity Source code
estimate.biomass Source code
estimate.number Source code
exploitationrates Source code
export.to.shapefile Source code
extract.solution Source code
extract.summary.data.for.one.variable Source code
fb Source code
fecundity.allometric Source code
fecundity.indirect Source code
figure.cpue.timeseries Source code
figure.crab.groundfish.survey Source code
figure.effort.timeseries Source code
figure.exploitation.rate Source code
figure.growth.instar Source code
figure.immature.male Source code
figure.immature.skipmoulter.male Source code
figure.interpolated.results Source code
figure.landings.timeseries Source code
figure.mature.CC12.male Source code
figure.mature.CC34.male Source code
figure.mature.CC5.male Source code
figure.observed.size.freq Source code
figure.sizefreq.carapacecondition Source code
figure.timeseries.bycatch Source code
figure.timeseries.errorbars Source code
figure.timeseries.interpolated Source code
figure.timeseries.larvae Source code
figure.timeseries.snowcrab.habitat Source code
figure.timeseries.snowcrab.habitat.temperatures Source code
figure.timeseries.survey Source code
figure.timeseries.survey.direct Source code
figure.timeseries.survey_oneoffs Source code
figure.timeseries.surveyindex.fishablebiomass Source code
figure_area_based_extraction_from_carstm Source code
filter.class Source code
filter.durometer Source code
filter.eggPr Source code
filter.independent.variables Source code
filter.mat Source code
filter.prediction.locations Source code
filter.region Source code
filter.season Source code
filter.set Source code
filter.sex Source code
filter.shell Source code
filter.size Source code
filter.stage Source code
filter.stage.fmat Source code
filter.towquality Source code
fishery.model.jags Source code
fishery_data Source code
fishery_model Source code
fishery_model_data_inputs Source code
fishing.area.designations Source code
format.crude.odds Source code
get.annual.timeseries Source code
get.cohort.data Source code
get.effects.from.model Source code
get.fishery.stats.by.region Source code Source code
get.hist.data Source code
get.main.effects Source code
get.marked Source code
get.move Source code
get.population.projection.parameters Source code
get.rawdata.historical Source code
get.recaps Source code
get.stepwise.model.results Source code
get.structured.data Source code
get_feeding_data Source code
graphics.convert Source code
grid.logbook Source code
gridSets Source code
habitat.template.lookup Source code
habitat.usage Source code
hist.legal Source code
histogram_with_kernel Source code
histograms.size.maturity Source code
histograms.size.maturity.single.area Source code
histograms.size.maturity.update Source code Source code
identify_modes Source code
identify_neigbours Source code
interpolate.missing.xyz Source code
interpolation.db Source code
inverse.logit Source code
isEsonar Source code
jackknifeCPUE Source code
jags.extract Source code
landings.decomposed Source code
load.environment Source code
load.minilog.rawdata Source code
load.minilog.rawdata.one.file.per.day Source code
load.netmind.rawdata Source code
load.seabird.rawdata Source code
logbook.db Source code
logbook.determine.region Source code
logbook.fisheries.stats.merge Source code
logbook.prorate Source code
lookup.biomass.vars Source code
lookup.numbers.vars Source code
make.classes Source code
make.evenness.spatial Source code
make.fisheries.ts Source code
make.histograms Source code
make.maturity.spatial Source code
make.mortality Source code
makeMap Source code
makePBS Source code
map.basemap.with.cfa.lines Source code
map.cfas Source code
map.fisheries.data Source code
map.larval.distributions Source code
map.logbook.locations Source code
map.maturity Source code
map.movement Source code
map.observer.locations Source code
map.set.information Source code
map.survey.locations Source code
map.temperatures Source code
matrix.form Source code
maturity_region_year Source code
mb Source code
mean.weights.by.category Source code
meanweights_by_arealunit_modelled Source code
minilog.db Source code
minilogDate Source code
net.configuration Source code
netmind.db Source code
netmindDate Source code
no.grid.logbook Source code
nodes2matrix Source code
observer.compute.fisheries.exploitation Source code
observer.data.formats Source code
observer.db Source code
observer.get.counts.by.class Source code
observer.historical.data Source code
observer.historical.data.concatenate Source code
observer.load.rawdata Source code
ordinate Source code
plot.freq.distribution.prior.posterior Source code
plot.projections Source code
plot_histogram_carapace_width Source code
plot_x__y_density Source code
predict.mass.g.from.CW.mm Source code
predict.maturity.males Source code
predictmaturity Source code
predictweights Source code
prep.maturity.data Source code
projected.exploitation.rate Source code
proportion.cc Source code
proportion.legal Source code
proportion.soft Source code
range.cap Source code
recode.time Source code
recode.time.maturity Source code
region.decompose Source code
remove.na Source code
removeDuplicateswithNA Source code
rename.bio.snowcrab.variables Source code
rename.df Source code
rescale.min.max Source code
seabird.db Source code
seabirdDate Source code
setmerge Source code
sex.ratios Source code
sim.markov Source code
size.at.maturity Source code
size_at_maturity Source code
size_distributions Source code
smooth_data Source code
snowcrab.db Source code
snowcrab.lookup.mapparams Source code
snowcrab.lookupnames Source code
snowcrab.timeseries.db Source code
snowcrab.variablelist Source code
snowcrab_load_key_results_to_memory Source code
snowcrab_mapping_features Source code
snowcrab_parameters Source code
snowcrab_tacs Source code
subset.biomass Source code
sum.data Source code
tab.4.tex Source code
table.view Source code
table_counts Source code
tagging.example.usage Source code
transition.matrices Source code
tripcode.to.timestamp Source code
ts.landings.and.tacs Source code
unadjusted.odds Source code
variable.recode Source code
zeroInflate Source code
jae0/snowcrab documentation built on Feb. 27, 2024, 2:42 p.m.

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