NEWS.md

In jasenfinch/profilePro: Unified Input and Output for Processing of Metabolomic Profiling Experiments

profilePro 0.8.2

• Add Bioconductor dependencies to the remote field in DESCRIPTION to ensure that these can be installed when installing the package using pak or renv.

• Fix for plotChromatogram() when the specified sample classes using the cls argument is not a character vector.

• Fix for plotChromatogram() with the now returned MChromatograms class object from xcms::chromatogram().

profilePro 0.8.1

• Temporarily use jasenfinch/BiocParallel.FutureParam until the pull request for the package installation error due to the update of BiocParallel to version 1.30.0.

• Removed readr from the Imports field the package DESCRIPTION.

profilePro 0.8.0

• Added missing import of MSnbase::as.MSnExp.OnDiskMSnExp().

• Re-export plan() from the future package.

• The parallel processing back-end for xcms processing is now specified using plan() from future package. This is enabled by the BiocParallel.FutureParam package.

• Removed the nCores argument from profileParameters().

• Removed patchwork as a dependency.

profilePro 0.7.1

• Removed parallel arguments from erah processing routine as these now support the use of the future package.

• Fixed LC-MS processing routine when on a single ionisation mode is present.

• Fixed plotChromatogram() for single ionisation mode data.

• Added unit tests for GC-MS processing using xcms.

• Improved plotting aesthetics of plotChromatogram() and plotTIC().

profilePro 0.7.0

• Added a NEWS.md file to track changes to the package.

• Added pkgdown site available at https://jasenfinch.github.io/profilePro/

• The magrittr::%>% now re-exported.

• Improved console output for profilePro::profileProcess().

• Added full examples for profilePro::profileProcess().

• The nCores argument can now be supplied profilePro::profileProcess() to select the number of cores to use for parallel processing.

• Added profilePro::availableTechniques() to list available processing techniques in the package.

• MetaboProfile S4 class now inherits from ProfileParameters S4 class.

• Added get and set methods for the MetaboProfile S4 class.

• Added get and set methods for the ProfileParamters S4 class.

• Added validators for MetaboProfile S4 class to ensure that sample information contains the correct fields and that the file names in the specified paths match those in the sample information.

• Added unit tests

jasenfinch/profilePro documentation built on Feb. 2, 2023, 9:19 p.m.