Files in jayhesselberth/valr
Genome Interval Arithmetic
.Rbuildignore
.github/.gitignore
.github/CODE_OF_CONDUCT.md
.github/CONTRIBUTING.md
.github/ISSUE_TEMPLATE.md
.github/workflows/check-standard.yaml
.github/workflows/pkgdown.yaml
.github/workflows/pr-commands.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/RcppExports.R
R/bed12_to_exons.r
R/bed_absdist.r
R/bed_closest.r
R/bed_cluster.r
R/bed_complement.r
R/bed_coverage.R
R/bed_fisher.r
R/bed_flank.r
R/bed_genomecov.R
R/bed_glyph.r
R/bed_intersect.r
R/bed_jaccard.r
R/bed_makewindows.r
R/bed_map.r
R/bed_merge.r
R/bed_partition.r
R/bed_projection.r
R/bed_random.r
R/bed_reldist.r
R/bed_shift.r
R/bed_shuffle.r
R/bed_slop.r
R/bed_sort.r
R/bed_subtract.r
R/bed_window.r
R/db.r
R/features.r
R/globals.r
R/read_bed.r
R/read_genome.r
R/read_vcf.r
R/spacing.r
R/strands.r
R/tbls.r
R/utils-external.r
R/utils.r
R/valr-package.r
README.Rmd
README.md
bench/benchmarks.Rmd
codecov.yml
cran-comments.md
inst/CITATION
inst/example/bed_map.r
inst/extdata/12fields.bed.gz
inst/extdata/3fields.bed.gz
inst/extdata/6fields.bed.gz
inst/extdata/bug254_e.bed
inst/extdata/genes.hg19.chr22.bed.gz
inst/extdata/genome.txt.gz
inst/extdata/hela.h3k4.chip.bg.gz
inst/extdata/hg19.chrom.sizes.gz
inst/extdata/hg19.dnase1.bw
inst/extdata/hg19.gencode.gtf.gz
inst/extdata/hg19.refGene.chr22.bed.gz
inst/extdata/hg19.rmsk.chr22.bed.gz
inst/extdata/hg19.snps147.chr22.bed.gz
inst/extdata/mm9.refGene.bed.gz
inst/extdata/sample.broadPeak.gz
inst/extdata/sample.narrowPeak.gz
inst/extdata/test.bg.gz
inst/extdata/test.vcf.gz
inst/include/DataFrameBuilder.h
inst/include/IntervalTree.h
inst/include/IntervalTree_ext.h
inst/include/genome.h
inst/include/group_apply.h
inst/include/grouped_dataframe.h
inst/include/intervals.h
inst/include/random.h
inst/include/utils.h
inst/include/valr.h
man-roxygen/groups.R
man-roxygen/stats.R
man/bed12_to_exons.Rd
man/bed_absdist.Rd
man/bed_closest.Rd
man/bed_cluster.Rd
man/bed_complement.Rd
man/bed_coverage.Rd
man/bed_fisher.Rd
man/bed_flank.Rd
man/bed_genomecov.Rd
man/bed_glyph.Rd
man/bed_intersect.Rd
man/bed_jaccard.Rd
man/bed_makewindows.Rd
man/bed_map.Rd
man/bed_merge.Rd
man/bed_partition.Rd
man/bed_projection.Rd
man/bed_random.Rd
man/bed_reldist.Rd
man/bed_shift.Rd
man/bed_shuffle.Rd
man/bed_slop.Rd
man/bed_sort.Rd
man/bed_subtract.Rd
man/bed_window.Rd
man/bound_intervals.Rd
man/create_introns.Rd
man/create_tss.Rd
man/create_utrs3.Rd
man/create_utrs5.Rd
man/db.Rd
man/figures/README-intersect_glyph-1.png
man/figures/logo.png
man/flip_strands.Rd
man/gr_to_bed.Rd
man/id.Rd
man/id_var.Rd
man/interval_spacing.Rd
man/ivl_df.Rd
man/read_bed.Rd
man/read_bigwig.Rd
man/read_genome.Rd
man/read_gtf.Rd
man/read_vcf.Rd
man/valr.Rd
man/valr_example.Rd
pkgdown/_pkgdown.yml
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
src/.gitignore
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/bed12toexons.cpp
src/closest.cpp
src/complement.cpp
src/coverage.cpp
src/dist.cpp
src/flank.cpp
src/gcoverage.cpp
src/init.c
src/intersect.cpp
src/makewindows.cpp
src/merge.cpp
src/partition.cpp
src/random.cpp
src/shuffle.cpp
src/subtract.cpp
src/valr_utils.cpp
tests/testthat.R
tests/testthat/_snaps/glyph/intersect-glyph-is-ok.svg
tests/testthat/_snaps/glyph/merge-glyph-is-ok.svg
tests/testthat/helper-astyle.r
tests/testthat/helper-vdiffr.R
tests/testthat/test-db.r
tests/testthat/test_absdist.r
tests/testthat/test_bed12_to_exons.r
tests/testthat/test_closest.r
tests/testthat/test_cluster.r
tests/testthat/test_complement.r
tests/testthat/test_coverage.r
tests/testthat/test_features.r
tests/testthat/test_fisher.r
tests/testthat/test_flank.r
tests/testthat/test_genome.r
tests/testthat/test_genomecov.R
tests/testthat/test_glyph.r
tests/testthat/test_groups.r
tests/testthat/test_intersect.r
tests/testthat/test_jaccard.r
tests/testthat/test_makewindows.r
tests/testthat/test_map.r
tests/testthat/test_merge.r
tests/testthat/test_partition.r
tests/testthat/test_projection.r
tests/testthat/test_random.r
tests/testthat/test_read_bed.r
tests/testthat/test_read_vcf.r
tests/testthat/test_reldist.r
tests/testthat/test_shift.r
tests/testthat/test_shuffle.r
tests/testthat/test_slop.r
tests/testthat/test_sort.r
tests/testthat/test_spacing.r
tests/testthat/test_strands.r
tests/testthat/test_subtract.r
tests/testthat/test_tbls.r
tests/testthat/test_types.R
tests/testthat/test_utils.r
tests/testthat/test_window.r
valr.Rproj
vignettes/.gitignore
vignettes/interval-stats.Rmd
vignettes/valr.Rmd
