compute_spectral_species: this function reads PCA file and defines the spectral species...

In jbferet/biodivMapR: biodivMapR: an R package for a- and ß-diversity mapping using remotely-sensed images

this function reads PCA file and defines the spectral species for each pixel based on the set of cluster centroids defined for each iteration applies kmeans –> closest cluster corresponds to the "spectral species"

Description

this function reads PCA file and defines the spectral species for each pixel based on the set of cluster centroids defined for each iteration applies kmeans –> closest cluster corresponds to the "spectral species"

Usage

compute_spectral_species(
  PCA_Path,
  Input_Mask_File,
  Spectral_Species_Path,
  Location_RW,
  PC_Select,
  Kmeans_info,
  nbCPU = 1
)

Arguments

PCA_Path	character. path for the PCA image
Input_Mask_File	character. Path for the mask
Spectral_Species_Path	character. path for spectral species file to be written
Location_RW	numeric. where to read/write information in binary file
PC_Select	numeric. PCs selected from PCA
Kmeans_info	list. information about kmeans computed in previous step
nbCPU	numeric. number of CPUs available

Value

None

jbferet/biodivMapR documentation built on Jan. 26, 2024, 10:38 p.m.