In jdgagnon/antibodySeek: Create a table of antibodies available.

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "README-"
)

antibodySeek

by John D. Gagnon
University of California, San Francisco

Table of Contents

Overview
Installation
Usage
Session info
License

Overview

A shinyapp-based GUI to identify available antibodies

Installation

1. If you do not already have R installed, or your version is out of date, download and install the latest version.

2. Optionally, install the latest version of RStudio Desktop.

3. Download the package from GitHub

install.packages("devtools")
devtools::install_github("jdgagnon/antibodySeek")

Usage

Load the package into the R session.

library(antibodySeek)

To initialize the shiny app, paste the following code in your R console and run it.

antibodySeek()

1. Load a spreadsheet containing the antibody database:

2. Spreadsheet must be in the following format:

knitr::kable(
  matrix(c("CD3", "X", "", "",
           "CD4", "", "X", "X",
           "CD8", "X", "X", "X"), 
         ncol = 4, byrow = TRUE), 
  col.names = c("Antibody", "PE", "FITC", "etc..."))

• Use the file browser to select a csv file

OR

• Load a spreadsheet from Google Sheets by filling out the spreadsheet name and clicking Find Google Sheet.

• Choose the approprate worksheet

• Select the antibodies from the dropdown menu that you wish to use.

Session info

Here is the output of sessionInfo() on the system on which this package was developed:

sessionInfo()

License

GNU GPL-3.0-or-later

jdgagnon/antibodySeek documentation built on May 17, 2019, 12:02 p.m.