Files in jdreyf/jdcbioinfo
Joslin Diabetes Center bioinformatics utilities
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/add_avg_beta.R
R/assoc.R
R/binary_str_lengths.R
R/combine_directional_pvalues.R
R/cor_by_grp.R
R/correct_null_distribution.R
R/deseq2_contrasts.R
R/dream_contrasts.R
R/dream_cor.R
R/dream_ftest_contrasts.R
R/dream_ftest_pairwise.R
R/edger_contrasts.R
R/edger_ftest_contrasts.R
R/enrichFRY.R
R/ezbacon.R
R/ezgetBM.R
R/ezumap.R
R/filter_valids.R
R/find_mode.R
R/gsub0.R
R/hclust_and_heat.R
R/hclust_in_grp.R
R/impute_normal.R
R/limma_find_markers.R
R/limma_ftest_contrasts.R
R/limma_ftest_pairwise.R
R/limma_treat_max.R
R/limma_treat_pairwise.R
R/limma_trend_plot.R
R/make_file_links.R
R/make_gsea_barplot.R
R/make_gsea_cnet.R
R/make_piechart.R
R/make_smpdb_glist.R
R/map_by_adist.R
R/match_met_nms.R
R/multi_assoc.R
R/multi_enrichFRY.R
R/multi_pval2z.R
R/multi_pval2zlist.R
R/parse_cutadapt_logs.R
R/parse_featureCounts_logs.R
R/parse_kallisto_logs.R
R/parse_star_logs.R
R/pc_assoc.R
R/plot_pvals.R
R/pval2z.R
R/rankprod.r
R/ranksum.R
R/revcomp.R
R/sample_bsgenome_regions.r
R/select_top.R
R/select_top_2sided.R
R/signed_rankprod.R
R/signed_ranksum.R
R/sub0.R
R/venn_fisher_test.R
R/z_2prop_pooled.R
README.md
codecov.yml
jdcbioinfo.Rproj
man/add_avg_beta.Rd
man/assoc.Rd
man/binary_str_lengths.Rd
man/combine_directional_pvalues.Rd
man/cor_by_grp.Rd
man/correct_null_distribution.Rd
man/deseq2_contrasts.Rd
man/dream_contrasts.Rd
man/dream_cor.Rd
man/dream_ftest_contrasts.Rd
man/dream_ftest_pairwise.Rd
man/edger_contrasts.Rd
man/edger_ftest_contrasts.Rd
man/enrichFRY.Rd
man/ezbacon.Rd
man/ezgetBM.Rd
man/ezumap.Rd
man/filter_valids.Rd
man/find_mode.Rd
man/gsub0.Rd
man/hclust_and_heat.Rd
man/hclust_in_grp.Rd
man/impute_normal.Rd
man/limma_find_markers.Rd
man/limma_ftest_contrasts.Rd
man/limma_ftest_pairwise.Rd
man/limma_treat_max.Rd
man/limma_treat_pairwise.Rd
man/limma_trend_plot.Rd
man/make_file_links.Rd
man/make_gsea_barplot.Rd
man/make_gsea_cnet.Rd
man/make_piechart.Rd
man/make_smpdb_glist.Rd
man/map_by_adist.Rd
man/match_met_nms.Rd
man/multi_assoc.Rd
man/multi_enrichFRY.Rd
man/multi_pval2z.Rd
man/multi_pval2zlist.Rd
man/parse_cutadapt_logs.Rd
man/parse_featureCounts_logs.Rd
man/parse_kallisto_logs.Rd
man/parse_star_logs.Rd
man/pc_assoc.Rd
man/plot_pvals.Rd
man/pval2z.Rd
man/rankprod.Rd
man/ranksum.Rd
man/revcomp.Rd
man/sample_bsgenome_regions.Rd
man/select_top.Rd
man/select_top_2sided.Rd
man/signed_rankprod.Rd
man/signed_ranksum.Rd
man/sub0.Rd
man/venn_fisher_test.Rd
man/z_2prop_pooled.Rd
tests/testthat.R
tests/testthat/helper-jdcbioinfo.R
tests/testthat/test-add_avg_beta.R
tests/testthat/test-binary_str_lengths.R
tests/testthat/test-combine_directional_pvalues.R
tests/testthat/test-cor_by_grp.R
tests/testthat/test-correct_null_distribution.R
tests/testthat/test-dream_contrasts.R
tests/testthat/test-dream_ftest_contrasts.R
tests/testthat/test-dream_ftest_pairwise.R
tests/testthat/test-edger_contrasts.R
tests/testthat/test-edger_ftest_contrasts.R
tests/testthat/test-ezbacon.R
tests/testthat/test-find_mode.R
tests/testthat/test-hclust_and_heat.R
tests/testthat/test-hclust_in_grp.R
tests/testthat/test-limma_find_markers.R
tests/testthat/test-limma_ftest_contrasts.R
tests/testthat/test-limma_ftest_pairwise.R
tests/testthat/test-limma_treat_max.R
tests/testthat/test-limma_treat_pairwise.R
tests/testthat/test-map_by_adist.R
tests/testthat/test-match_met_nms.R
tests/testthat/test-multi_pval2z.R
tests/testthat/test-pval2z.R
tests/testthat/test-rankprod.R
tests/testthat/test-ranksum.R
tests/testthat/test-revcomp.R
tests/testthat/test-select_top.R
tests/testthat/test-signed_rankprod.R
tests/testthat/test-signed_ranksum.R
tests/testthat/test-venn_fisher_test.R
tests/testthat/test-z_2prop_pooled.R
