plot_specific: plot_specific

Description Usage Arguments Value Examples

View source: R/plot_specific.R

Description

Graphs a line plot of a row with a selected window width in a matrix, produced by daily_response function.

Usage

1
2
plot_specific(result_daily_response, window_width, title = TRUE,
  ylimits = NULL, reference_window = "start", type = "daily")

Arguments

result_daily_response

a list with three objects as produced by daily_response function

window_width

integer representing window width to be displayed

title

logical, if set to FALSE, no plot title is displayed

ylimits

limit of the y axes. It should be given as ylimits = c(0,1)

reference_window

character string, the reference_window argument describes, how each calculation is referred. There are three different options: 'start' (default), 'end' and 'middle'. If the reference_window argument is set to 'start', then each calculation is related to the starting day of window. If the reference_window argument is set to 'middle', each calculation is related to the middle day of window calculation. If the reference_window argument is set to 'end', then each calculation is related to the ending day of window calculation. For example, if we consider correlations with window from DOY 15 to DOY 35. If reference window is set to ‘start’, then this calculation will be related to the DOY 15. If the reference window is set to ‘end’, then this calculation will be related to the DOY 35. If the reference_window is set to 'middle', then this calculation is related to DOY 25.

type

the character string describing type of analysis: daily or monthly

Value

A ggplot2 object containing the plot display

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
## Not run: 
data(LJ_daily_temperatures)
data(KRE_daily_temperatures)
data(example_proxies_1)
Example1 <- daily_response(response = example_proxies_1,
env_data = LJ_daily_temperatures, method = "lm", metric = "r.squared",
lower_limit = 90, upper_limit = 150, row_names_subset = TRUE,
previous_year = TRUE)
plot_specific(Example1, window_width = 90)

Example2 <- daily_response(response = data_TRW_1,
env_data = KRE_daily_temperatures, method = "cor",
metric = "adj.r.squared", lower_limit = 150, upper_limit = 155,
neurons = 1, row_names_subset = TRUE, previous_year = TRUE)
plot_specific(Example2, window_width = 153, title = TRUE)

Example3 <- daily_response(response = example_proxies_1,
env_data = LJ_daily_temperatures, method = "brnn",
metric = "adj.r.squared", lower_limit = 150, upper_limit = 155,
neurons = 1, previous_year = TRUE, row_names_subset = TRUE)
plot_specific(Example3, window_width = 153, title = TRUE)

## End(Not run)

jernejjevsenak/dendroTools documentation built on July 22, 2019, 5:40 p.m.