Man pages for jianhong/ATACqc
ATAC sequencing Quality Control

ATACqc-packageATAC sequence QC
enrichedFragmentsenrichment for nucleosome-free fragments and nucleosome...
factorFootprintsplot ATAC-seq footprints infer factor occupancy genome wide
fragSizeDistfragment size distribution
plotFootprintsPlots a footprint estimated by Centipede
pwmscoresmax PWM scores for sequences
readBamFileread in bam files
shiftGAlignmentsListshift 5' ends
shiftReadsshift read for 5'end
splitBamprepare bam files for downstream analysis
splitGAlignmentsByCutsplit bams into nucleosome free, mononucleosome, dinucleosome...
writeListOfGAlignmentsexport list of GAlignments into bam files
jianhong/ATACqc documentation built on May 17, 2017, 9:18 p.m.