jianhong/InPAS: InPAS: a bioconductor package for the identification of novel alternative PolyAdenylation Sites (PAS) using RNA-seq data

Alternative polyadenylation (APA) is one of the important post-transcriptional regulation mechanisms which occurs in most human genes. InPAS facilitates the discovery of novel APA sites and the differential usage of APA sites from RNA-Seq data. It leverages cleanUpdTSeq to fine tune identified APA sites by removing false sites due to internal-priming.

Getting started

Package details

AuthorJianhong Ou, Sungmi M. Park, Michael R. Green and Lihua Julie Zhu
Bioconductor views AlternativeSplicing Coverage DifferentialSplicing GeneRegulation ImmunoOncology RNASeq Sequencing Transcription
MaintainerJianhong Ou <[email protected]>, Lihua Julie Zhu <[email protected]>
LicenseGPL (>= 2)
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
jianhong/InPAS documentation built on Nov. 6, 2019, 9:55 a.m.