Files in jianhong/ribosomeProfilingQC
Ribosome Profiling Quality Control

DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/FLOSS.R R/PAmotif.R R/assignReadingFrame.R R/codonUsage.R R/countReads.R R/coverageDepth.R R/coverageRates.R R/cvgd.R R/estimatePsite.R R/filterCDS.R R/fixSeqlevelsStyle.R R/frameCounts.R R/getFPKM.R R/getORFscore.R R/getPsiteCoordinates.R R/ggBar.R R/metaPlot.R R/normByRUVs.R R/plotDistance2Codon.R R/plotFrameDensity.R R/plotSpliceEvent.R R/plotTE.R R/plotTranscript.R R/prepareCDS.R R/readsDistribution.R R/readsEndPlot.R R/readsLenToKeep.R R/ribosomeReleaseScore.R R/shiftReadsByFrame.R R/simulateRPF.R R/spliceEvent.R R/strandPlot.R R/summaryReadsLength.R R/translationalEfficiency.R README.md
inst/extdata/CDS.rds
inst/extdata/Danio_rerio.GRCz10.91.chr1.gtf.gz
inst/extdata/RPF.KD1.1.bam
inst/extdata/RPF.KD1.1.bam.bai
inst/extdata/RPF.KD1.2.bam
inst/extdata/RPF.KD1.2.bam.bai
inst/extdata/RPF.WT.1.bam
inst/extdata/RPF.WT.1.bam.bai
inst/extdata/RPF.WT.2.bam
inst/extdata/RPF.WT.2.bam.bai
inst/extdata/RPF.chr1.bad.bam
inst/extdata/RPF.chr1.bad.bam.bai
inst/extdata/cnts.rds
inst/extdata/danrer10.annotations.rds
inst/extdata/mRNA.KD1.1.bam
inst/extdata/mRNA.KD1.1.bam.bai
inst/extdata/mRNA.KD1.2.bam
inst/extdata/mRNA.KD1.2.bam.bai
inst/extdata/mRNA.WT.1.bam
inst/extdata/mRNA.WT.1.bam.bai
inst/extdata/mRNA.WT.2.bam
inst/extdata/mRNA.WT.2.bam.bai
inst/extdata/samplePc.rds
man/FLOSS.Rd man/PAmotif.Rd man/assignReadingFrame.Rd man/codonUsage.Rd man/countReads.Rd man/coverageDepth.Rd man/coverageRates.Rd man/cvgd-class.Rd man/estimatePsite.Rd man/filterCDS.Rd man/frameCounts.Rd man/getFPKM.Rd man/getORFscore.Rd man/getPsiteCoordinates.Rd man/ggBar.Rd man/metaPlot.Rd man/normByRUVs.Rd man/plotDistance2Codon.Rd man/plotFrameDensity.Rd man/plotSpliceEvent.Rd man/plotTE.Rd man/plotTranscript.Rd man/prepareCDS.Rd man/readsDistribution.Rd man/readsEndPlot.Rd man/readsLenToKeep.Rd man/ribosomeReleaseScore.Rd man/shiftReadsByFrame.Rd man/simulateRPF.Rd man/spliceEvent.Rd man/strandPlot.Rd man/summaryReadsLength.Rd man/translationalEfficiency.Rd tests/runTests.R tests/testthat/test_estimatePsite.R tests/testthat/test_filterCDS.R tests/testthat/test_frameCounts.R tests/testthat/test_getPsiteCoordinates.R tests/testthat/test_prepareCDS.R tests/testthat/test_readsLenToKeep.R tests/testthat/test_shiftReads.R
vignettes/TSSdocking.png
vignettes/activeExpression.jpg
vignettes/bibliography.bib
vignettes/nature.csl
vignettes/ribosomeProfilingQC.Rmd
vignettes/schematic.ribosome.prof.jpg
jianhong/ribosomeProfilingQC documentation built on March 15, 2024, 7:03 p.m.