README.md

In jingwyang/AnceTran: the R package for analyzing TF-binding evolution based on ChIP-seq data

title: "README" author: "Jingw Yang" date: "2018/01/30" output: md_document

AnceTran

:smile:

AnceTran is an R package that performs analyses of transcriptome evolution based on RNA-seq expression data or ChIP-seq TF binding data, including optimized input formatting, normalization and pair-wise distance evaluation, transcriptome character tree construction and ancestral transcriptome state inference.

AnceTran package is under active developing, current developing version 2.0 is available at https://github.com/jingwyang/AnceTran.

A convenient way to install package from github is through devtools package:

```{r, eval=FALSE} install.packages('devtools') devtools::install_github("jingwyang/AnceTran")

Users can also download *AnceTran* package and install locally through:

```{r, eval=FALSE}
install.packages("filePath/AnceTran.2.0.tar.gz", repos = NUll, type = "source")

jingwyang/AnceTran documentation built on May 19, 2019, 2:57 a.m.