Man pages for jmw86069/jamma
MA-plots for omics data

blockArrowMargin	Draw block arrows in plot margins
centerGeneData	Center gene data
centerGeneData_v1	Center gene data
element_grob.element_textbox_colorsub	Custom ggplot2 element textbox highlight grob
element_textbox_colorsub	Custom ggplot2 element textbox highlight
find_colname	Find colname by string or pattern
fold_to_log2fold	Convert normal signed fold change to log2 fold change
get_se_assaydata	Get SummarizedExperiment assay matrix data
gradient_rect	Rectangle with color gradient fill
handle_highlightPoints	Handle highlightPoints argument to jammaplot()
jamma	jamma: MA-plots for omics data
jammacalc	Calculate MA-plot data
jammanorm	Normalize data using MA-plot logic
jammaplot	Produce MA-plot of omics data.
log2fold_to_fold	Convert log2 fold change to signed fold change
logAxis	Log-scaled axis including transformed P-values
matrix_to_column_rank	Convert numeric matrix to column-rank data
outer_legend	Add legend in the outer margin
points2polygonHull	define a polygon hull around points
update_function_params	Update function default parameters
update_list_elements	Update a subset of list elements (deprecated)
volcano_plot	Volcano plot