## S4 method for signature 'ConsensusPartition' get_stat(object, k = object@k)
number of partitions. The value can be a vector.
The statistics are:
cophenetic correlation coefficient. It measures if hierarchical clustering is applied on the consensus matrix, how good it correlates to the consensus matrix itself.
proportion of ambiguous clustering, calculated by
the mean silhouette score.
the mean probability that each partition fits the consensus partition, calculated by
the increased area under ecdf to the previous k
the Rand index which is the percent of pairs of samples that are both in a same cluster or both are not in a same cluster in the partition of
the ratio of pairs of samples are both in a same cluster in the partition of
k-1 and the pairs of samples are both in a same cluster in the partition
A matrix of partition statistics for all k.
Zuguang Gu <[email protected]>
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