Files in jranke/mkin
Kinetic Evaluation of Chemical Degradation Data
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
GNUmakefile
NAMESPACE
NEWS.md
R/AIC.mmkin.R
R/CAKE_export.R
R/D24_2014.R
R/add_err.R
R/anova.saem.mmkin.R
R/aw.R
R/confint.mkinfit.R
R/create_deg_func.R
R/dimethenamid_2018.R
R/ds_mixed.R
R/endpoints.R
R/f_time_norm_focus.R
R/focus_soil_moisture.R
R/hierarchical_kinetics.R
R/illparms.R
R/ilr.R
R/intervals.R
R/llhist.R
R/loftest.R
R/logLik.mkinfit.R
R/lrtest.mkinfit.R
R/max_twa_parent.R
R/mean_degparms.R
R/mhmkin.R
R/mixed.mmkin.R
R/mkin_long_to_wide.R
R/mkin_wide_to_long.R
R/mkinds.R
R/mkinerrmin.R
R/mkinerrplot.R
R/mkinfit.R
R/mkinmod.R
R/mkinparplot.R
R/mkinpredict.R
R/mkinresplot.R
R/mkinsub.R
R/mmkin.R
R/multistart.R
R/nafta.R
R/nlme.R
R/nlme.mmkin.R
R/nobs.mkinfit.R
R/parent_solutions.R
R/parms.R
R/parplot.R
R/plot.mixed.mmkin.R
R/plot.mkinfit.R
R/plot.mmkin.R
R/read_spreadsheet.R
R/residuals.mkinfit.R
R/saem.R
R/set_nd_nq.R
R/sigma_twocomp.R
R/status.R
R/summary.mkinfit.R
R/summary.mmkin.R
R/summary.nlme.mmkin.R
R/summary.saem.mmkin.R
R/summary_listing.R
R/transform_odeparms.R
R/update.mkinfit.R
README.html
README.md
_pkgdown.yml
data/D24_2014.rda
data/FOCUS_2006_DFOP_ref_A_to_B.rda
data/FOCUS_2006_FOMC_ref_A_to_F.rda
data/FOCUS_2006_HS_ref_A_to_F.rda
data/FOCUS_2006_SFO_ref_A_to_F.rda
data/FOCUS_2006_datasets.RData
data/NAFTA_SOP_2015.rda
data/NAFTA_SOP_Attachment.rda
data/dimethenamid_2018.rda
data/ds_mixed.rda
data/experimental_data_for_UBA_2019.rda
data/focus_soil_moisture.rda
data/mccall81_245T.RData
data/schaefer07_complex_case.RData
data/synthetic_data_for_UBA_2014.rda
data/test_data_from_UBA_2014.rda
docs/404.html
docs/articles/FOCUS_D.html
docs/articles/FOCUS_D_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/FOCUS_D_files/figure-html/plot-1.png
docs/articles/FOCUS_D_files/figure-html/plot_2-1.png
docs/articles/FOCUS_D_files/header-attrs-2.6/header-attrs.js
docs/articles/FOCUS_D_files/header-attrs-2.7/header-attrs.js
docs/articles/FOCUS_L.html
docs/articles/FOCUS_L_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/FOCUS_L_files/figure-html/unnamed-chunk-10-1.png
docs/articles/FOCUS_L_files/figure-html/unnamed-chunk-12-1.png
docs/articles/FOCUS_L_files/figure-html/unnamed-chunk-13-1.png
docs/articles/FOCUS_L_files/figure-html/unnamed-chunk-15-1.png
docs/articles/FOCUS_L_files/figure-html/unnamed-chunk-4-1.png
docs/articles/FOCUS_L_files/figure-html/unnamed-chunk-5-1.png
docs/articles/FOCUS_L_files/figure-html/unnamed-chunk-6-1.png
docs/articles/FOCUS_L_files/figure-html/unnamed-chunk-8-1.png
docs/articles/FOCUS_L_files/figure-html/unnamed-chunk-9-1.png
docs/articles/FOCUS_L_files/header-attrs-2.6/header-attrs.js
docs/articles/FOCUS_L_files/header-attrs-2.7/header-attrs.js
docs/articles/index.html
docs/articles/mkin.html
docs/articles/mkin_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/mkin_files/figure-html/unnamed-chunk-2-1.png
docs/articles/mkin_files/header-attrs-2.6/header-attrs.js
docs/articles/mkin_files/header-attrs-2.7/header-attrs.js
docs/articles/prebuilt/2022_cyan_pathway.html
docs/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-13-1.png
docs/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-14-1.png
docs/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-15-1.png
docs/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-20-1.png
docs/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-21-1.png
docs/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-22-1.png
docs/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-7-1.png
docs/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-8-1.png
docs/articles/prebuilt/2022_dmta_parent.html
docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-dfop-const-1.png
docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-dfop-tc-1.png
docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-dfop-tc-no-ranef-k2-1.png
docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-fomc-const-1.png
docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-fomc-tc-1.png
docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-hs-const-1.png
docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-hs-tc-1.png
docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-sfo-const-1.png
docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-sfo-tc-1.png
docs/articles/prebuilt/2022_dmta_parent_files/figure-html/multistart-full-par-1.png
docs/articles/prebuilt/2022_dmta_parent_files/figure-html/multistart-reduced-par-1.png
docs/articles/prebuilt/2022_dmta_parent_files/figure-html/multistart-reduced-par-llquant-1.png
docs/articles/prebuilt/2022_dmta_parent_files/figure-html/plot-saem-dfop-tc-no-ranef-k2-1.png
docs/articles/prebuilt/2022_dmta_pathway.html
docs/articles/prebuilt/2022_dmta_pathway_files/figure-html/saem-sforb-path-1-tc-reduced-convergence-1.png
docs/articles/prebuilt/2022_dmta_pathway_files/figure-html/unnamed-chunk-2-1.png
docs/articles/prebuilt/2022_dmta_pathway_files/figure-html/unnamed-chunk-3-1.png
docs/articles/prebuilt/2022_dmta_pathway_files/figure-html/unnamed-chunk-4-1.png
docs/articles/prebuilt/2022_dmta_pathway_files/figure-html/unnamed-chunk-6-1.png
docs/articles/prebuilt/2022_dmta_pathway_files/figure-html/unnamed-chunk-7-1.png
docs/articles/prebuilt/2022_dmta_pathway_files/figure-html/unnamed-chunk-8-1.png
docs/articles/prebuilt/2023_mesotrione_parent.html
docs/articles/prebuilt/2023_mesotrione_parent_files/figure-html/unnamed-chunk-14-1.png
docs/articles/prebuilt/2023_mesotrione_parent_files/figure-html/unnamed-chunk-19-1.png
docs/articles/prebuilt/2023_mesotrione_parent_files/figure-html/unnamed-chunk-25-1.png
docs/articles/prebuilt/2023_mesotrione_parent_files/figure-html/unnamed-chunk-30-1.png
docs/articles/prebuilt/2023_mesotrione_parent_files/figure-html/unnamed-chunk-8-1.png
docs/articles/twa.html
docs/articles/twa_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/twa_files/header-attrs-2.6/header-attrs.js
docs/articles/twa_files/header-attrs-2.7/header-attrs.js
docs/articles/web_only/FOCUS_Z.html
docs/articles/web_only/FOCUS_Z_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_1-1.png
docs/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_10-1.png
docs/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_11-1.png
docs/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_11a-1.png
docs/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_11b-1.png
docs/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_2-1.png
docs/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_3-1.png
docs/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_5-1.png
docs/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_6-1.png
docs/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_7-1.png
docs/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_9-1.png
docs/articles/web_only/FOCUS_Z_files/header-attrs-2.6/header-attrs.js
docs/articles/web_only/FOCUS_Z_files/header-attrs-2.7/header-attrs.js
docs/articles/web_only/NAFTA_examples.html
docs/articles/web_only/NAFTA_examples_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/web_only/NAFTA_examples_files/figure-html/p10-1.png
docs/articles/web_only/NAFTA_examples_files/figure-html/p11-1.png
docs/articles/web_only/NAFTA_examples_files/figure-html/p12a-1.png
docs/articles/web_only/NAFTA_examples_files/figure-html/p12b-1.png
docs/articles/web_only/NAFTA_examples_files/figure-html/p13-1.png
docs/articles/web_only/NAFTA_examples_files/figure-html/p14-1.png
docs/articles/web_only/NAFTA_examples_files/figure-html/p15a-1.png
docs/articles/web_only/NAFTA_examples_files/figure-html/p15b-1.png
docs/articles/web_only/NAFTA_examples_files/figure-html/p16-1.png
docs/articles/web_only/NAFTA_examples_files/figure-html/p5a-1.png
docs/articles/web_only/NAFTA_examples_files/figure-html/p5b-1.png
docs/articles/web_only/NAFTA_examples_files/figure-html/p6-1.png
docs/articles/web_only/NAFTA_examples_files/figure-html/p7-1.png
docs/articles/web_only/NAFTA_examples_files/figure-html/p8-1.png
docs/articles/web_only/NAFTA_examples_files/figure-html/p9a-1.png
docs/articles/web_only/NAFTA_examples_files/figure-html/p9b-1.png
docs/articles/web_only/NAFTA_examples_files/header-attrs-2.6/header-attrs.js
docs/articles/web_only/NAFTA_examples_files/header-attrs-2.7/header-attrs.js
docs/articles/web_only/benchmarks.html
docs/articles/web_only/benchmarks_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/web_only/benchmarks_files/header-attrs-2.6/header-attrs.js
docs/articles/web_only/benchmarks_files/header-attrs-2.7/header-attrs.js
docs/articles/web_only/compiled_models.html
docs/articles/web_only/compiled_models_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/web_only/compiled_models_files/header-attrs-2.6/header-attrs.js
docs/articles/web_only/dimethenamid_2018.html
docs/articles/web_only/dimethenamid_2018_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const-1.png
docs/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const_test-1.png
docs/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_tc_test-1.png
docs/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_sfo_const-1.png
docs/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_const-1.png
docs/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc-1.png
docs/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_10k-1.png
docs/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_1k-1.png
docs/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_const-1.png
docs/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_tc-1.png
docs/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const-1.png
docs/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc-1.png
docs/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_const-1.png
docs/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc-1.png
docs/articles/web_only/dimethenamid_2018_files/figure-html/plot_parent_nlme-1.png
docs/articles/web_only/mkin_benchmarks.rda
docs/articles/web_only/multistart.html
docs/articles/web_only/multistart_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/web_only/multistart_files/figure-html/unnamed-chunk-3-1.png
docs/articles/web_only/multistart_files/figure-html/unnamed-chunk-4-1.png
docs/articles/web_only/multistart_files/figure-html/unnamed-chunk-5-1.png
docs/articles/web_only/multistart_files/figure-html/unnamed-chunk-6-1.png
docs/articles/web_only/saem_benchmarks.html
docs/articles/web_only/saem_benchmarks_files/accessible-code-block-0.0.1/empty-anchor.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/deps/bootstrap-5.2.2/bootstrap.bundle.min.js
docs/deps/bootstrap-5.2.2/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.2.2/bootstrap.min.css
docs/deps/bootstrap-5.2.2/font.css
docs/deps/bootstrap-5.2.2/fonts/1Ptxg8zYS_SKggPN4iEgvnHyvveLxVs9pbCIPrc.woff
docs/deps/bootstrap-5.2.2/fonts/1Ptxg8zYS_SKggPN4iEgvnHyvveLxVvaorCIPrc.woff
docs/deps/bootstrap-5.2.2/fonts/4iCs6KVjbNBYlgo6ew.woff
docs/deps/bootstrap-5.2.2/fonts/4iCs6KVjbNBYlgoKfw7w.woff
docs/deps/bootstrap-5.2.2/fonts/4iCv6KVjbNBYlgoCxCvTtA.woff
docs/deps/bootstrap-5.2.2/fonts/4iCv6KVjbNBYlgoCxCvjsGyL.woff
docs/deps/bootstrap-5.2.2/fonts/6xK1dSBYKcSV-LCoeQqfX1RYOo3qPZ7nsDQ.woff
docs/deps/bootstrap-5.2.2/fonts/6xK1dSBYKcSV-LCoeQqfX1RYOo3qPa7j.woff
docs/deps/bootstrap-5.2.2/fonts/6xK3dSBYKcSV-LCoeQqfX1RYOo3aPA.woff
docs/deps/bootstrap-5.2.2/fonts/6xK3dSBYKcSV-LCoeQqfX1RYOo3qOK7j.woff
docs/deps/bootstrap-5.2.2/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3i54rAkw.woff
docs/deps/bootstrap-5.2.2/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vAkw.woff
docs/deps/bootstrap-5.2.2/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vwlxdo.woff
docs/deps/bootstrap-5.2.2/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ik4zAkw.woff
docs/deps/bootstrap-5.2.2/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ik4zwlxdo.woff
docs/deps/bootstrap-5.2.2/fonts/CSR54z1Qlv-GDxkbKVQ_dFsvWNRevw.woff
docs/deps/bootstrap-5.2.2/fonts/CSR54z1Qlv-GDxkbKVQ_dFsvaNA.woff
docs/deps/bootstrap-5.2.2/fonts/CSR64z1Qlv-GDxkbKVQ_TOQ.woff
docs/deps/bootstrap-5.2.2/fonts/CSR64z1Qlv-GDxkbKVQ_fOAKSw.woff
docs/deps/bootstrap-5.2.2/fonts/JTUHjIg1_i6t8kCHKm4532VJOt5-QNFgpCtZ6Ew9.woff
docs/deps/bootstrap-5.2.2/fonts/JTUHjIg1_i6t8kCHKm4532VJOt5-QNFgpCtr6Ew9.woff
docs/deps/bootstrap-5.2.2/fonts/JTUHjIg1_i6t8kCHKm4532VJOt5-QNFgpCuM70w9.woff
docs/deps/bootstrap-5.2.2/fonts/KFOlCnqEu92Fr1MmEU9fBBc-.woff
docs/deps/bootstrap-5.2.2/fonts/KFOlCnqEu92Fr1MmEU9vAA.woff
docs/deps/bootstrap-5.2.2/fonts/KFOlCnqEu92Fr1MmSU5fBBc-.woff
docs/deps/bootstrap-5.2.2/fonts/KFOlCnqEu92Fr1MmSU5vAA.woff
docs/deps/bootstrap-5.2.2/fonts/KFOlCnqEu92Fr1MmWUlfBBc-.woff
docs/deps/bootstrap-5.2.2/fonts/KFOlCnqEu92Fr1MmWUlvAA.woff
docs/deps/bootstrap-5.2.2/fonts/KFOmCnqEu92Fr1Me5g.woff
docs/deps/bootstrap-5.2.2/fonts/KFOmCnqEu92Fr1Mu4mxM.woff
docs/deps/bootstrap-5.2.2/fonts/QGYpz_kZZAGCONcK2A4bGOj8mNhL.woff
docs/deps/bootstrap-5.2.2/fonts/S6u8w4BMUTPHjxsAXC-s.woff
docs/deps/bootstrap-5.2.2/fonts/S6u8w4BMUTPHjxswWA.woff
docs/deps/bootstrap-5.2.2/fonts/S6u9w4BMUTPHh6UVSwiPHw.woff
docs/deps/bootstrap-5.2.2/fonts/S6u9w4BMUTPHh6UVeww.woff
docs/deps/bootstrap-5.2.2/fonts/S6u9w4BMUTPHh7USSwiPHw.woff
docs/deps/bootstrap-5.2.2/fonts/S6u9w4BMUTPHh7USeww.woff
docs/deps/bootstrap-5.2.2/fonts/S6uyw4BMUTPHjx4wWA.woff
docs/deps/bootstrap-5.2.2/fonts/S6uyw4BMUTPHvxo.woff
docs/deps/bootstrap-5.2.2/fonts/UcCO3FwrK3iLTeHuS_fvQtMwCp50KnMw2boKoduKmMEVuFuYMZs.woff
docs/deps/bootstrap-5.2.2/fonts/UcCO3FwrK3iLTeHuS_fvQtMwCp50KnMw2boKoduKmMEVuI6fMZs.woff
docs/deps/bootstrap-5.2.2/fonts/UcCO3FwrK3iLTeHuS_fvQtMwCp50KnMw2boKoduKmMEVuLyfMZs.woff
docs/deps/bootstrap-5.2.2/fonts/XRXI3I6Li01BKofiOc5wtlZ2di8HDFwmRTA.woff
docs/deps/bootstrap-5.2.2/fonts/XRXI3I6Li01BKofiOc5wtlZ2di8HDGUmRTA.woff
docs/deps/bootstrap-5.2.2/fonts/XRXI3I6Li01BKofiOc5wtlZ2di8HDLshRTA.woff
docs/deps/bootstrap-5.2.2/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0Rk5hkWVAexg.woff
docs/deps/bootstrap-5.2.2/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0Rk5hkaVQ.woff
docs/deps/bootstrap-5.2.2/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0Rk8ZkWVAexg.woff
docs/deps/bootstrap-5.2.2/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0Rk8ZkaVQ.woff
docs/deps/bootstrap-5.2.2/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0RkyFjWVAexg.woff
docs/deps/bootstrap-5.2.2/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0RkyFjaVQ.woff
docs/deps/bootstrap-5.2.2/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsg-1x4gaVQ.woff
docs/deps/bootstrap-5.2.2/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsg-1y4k.woff
docs/deps/bootstrap-5.2.2/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsiH0B4gaVQ.woff
docs/deps/bootstrap-5.2.2/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsiH0C4k.woff
docs/deps/bootstrap-5.2.2/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsjZ0B4gaVQ.woff
docs/deps/bootstrap-5.2.2/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsjZ0C4k.woff
docs/deps/bootstrap-5.2.2/fonts/pe03MImSLYBIv1o4X1M8cc9iB_5p.woff
docs/deps/bootstrap-5.2.2/fonts/pe0qMImSLYBIv1o4X1M8cfe5.woff
docs/deps/bootstrap-5.2.2/fonts/q5uGsou0JOdh94bfvQlr.woff
docs/deps/data-deps.txt
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/dev/404.html
docs/dev/articles/2022_wp_1.1_dmta_parent.html
docs/dev/articles/2022_wp_1.1_dmta_parent_files/figure-html/convergence-saem-dfop-const-1.png
docs/dev/articles/2022_wp_1.1_dmta_parent_files/figure-html/convergence-saem-dfop-tc-1.png
docs/dev/articles/2022_wp_1.1_dmta_parent_files/figure-html/convergence-saem-dfop-tc-no-ranef-k2-1.png
docs/dev/articles/2022_wp_1.1_dmta_parent_files/figure-html/convergence-saem-fomc-const-1.png
docs/dev/articles/2022_wp_1.1_dmta_parent_files/figure-html/convergence-saem-fomc-tc-1.png
docs/dev/articles/2022_wp_1.1_dmta_parent_files/figure-html/convergence-saem-hs-const-1.png
docs/dev/articles/2022_wp_1.1_dmta_parent_files/figure-html/convergence-saem-hs-tc-1.png
docs/dev/articles/2022_wp_1.1_dmta_parent_files/figure-html/convergence-saem-sfo-const-1.png
docs/dev/articles/2022_wp_1.1_dmta_parent_files/figure-html/convergence-saem-sfo-tc-1.png
docs/dev/articles/2022_wp_1.1_dmta_parent_files/figure-html/multistart-full-par-1.png
docs/dev/articles/2022_wp_1.1_dmta_parent_files/figure-html/multistart-reduced-par-1.png
docs/dev/articles/2022_wp_1.1_dmta_parent_files/figure-html/multistart-reduced-par-llquant-1.png
docs/dev/articles/2022_wp_1.1_dmta_parent_files/figure-html/plot-saem-dfop-tc-no-ranef-k2-1.png
docs/dev/articles/FOCUS_D.html
docs/dev/articles/FOCUS_D_files/accessible-code-block-0.0.1/empty-anchor.js
docs/dev/articles/FOCUS_D_files/anchor-sections-1.0/anchor-sections.css
docs/dev/articles/FOCUS_D_files/anchor-sections-1.0/anchor-sections.js
docs/dev/articles/FOCUS_D_files/figure-html/plot-1.png
docs/dev/articles/FOCUS_D_files/figure-html/plot_2-1.png
docs/dev/articles/FOCUS_D_files/header-attrs-2.6/header-attrs.js
docs/dev/articles/FOCUS_L.html
docs/dev/articles/FOCUS_L_files/accessible-code-block-0.0.1/empty-anchor.js
docs/dev/articles/FOCUS_L_files/anchor-sections-1.0/anchor-sections.css
docs/dev/articles/FOCUS_L_files/anchor-sections-1.0/anchor-sections.js
docs/dev/articles/FOCUS_L_files/figure-html/unnamed-chunk-10-1.png
docs/dev/articles/FOCUS_L_files/figure-html/unnamed-chunk-12-1.png
docs/dev/articles/FOCUS_L_files/figure-html/unnamed-chunk-13-1.png
docs/dev/articles/FOCUS_L_files/figure-html/unnamed-chunk-15-1.png
docs/dev/articles/FOCUS_L_files/figure-html/unnamed-chunk-4-1.png
docs/dev/articles/FOCUS_L_files/figure-html/unnamed-chunk-5-1.png
docs/dev/articles/FOCUS_L_files/figure-html/unnamed-chunk-6-1.png
docs/dev/articles/FOCUS_L_files/figure-html/unnamed-chunk-8-1.png
docs/dev/articles/FOCUS_L_files/figure-html/unnamed-chunk-9-1.png
docs/dev/articles/FOCUS_L_files/header-attrs-2.6/header-attrs.js
docs/dev/articles/index.html
docs/dev/articles/mkin.html
docs/dev/articles/mkin_files/accessible-code-block-0.0.1/empty-anchor.js
docs/dev/articles/mkin_files/anchor-sections-1.0/anchor-sections.css
docs/dev/articles/mkin_files/anchor-sections-1.0/anchor-sections.js
docs/dev/articles/mkin_files/figure-html/unnamed-chunk-2-1.png
docs/dev/articles/mkin_files/header-attrs-2.6/header-attrs.js
docs/dev/articles/prebuilt/2022_cyan_pathway.html
docs/dev/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-11-1.png
docs/dev/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-12-1.png
docs/dev/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-13-1.png
docs/dev/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-14-1.png
docs/dev/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-15-1.png
docs/dev/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-17-1.png
docs/dev/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-18-1.png
docs/dev/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-19-1.png
docs/dev/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-20-1.png
docs/dev/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-21-1.png
docs/dev/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-22-1.png
docs/dev/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-6-1.png
docs/dev/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-7-1.png
docs/dev/articles/prebuilt/2022_cyan_pathway_files/figure-html/unnamed-chunk-8-1.png
docs/dev/articles/prebuilt/2022_dmta_parent.html
docs/dev/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-dfop-const-1.png
docs/dev/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-dfop-tc-1.png
docs/dev/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-dfop-tc-no-ranef-k2-1.png
docs/dev/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-fomc-const-1.png
docs/dev/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-fomc-tc-1.png
docs/dev/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-hs-const-1.png
docs/dev/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-hs-tc-1.png
docs/dev/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-sfo-const-1.png
docs/dev/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-sfo-tc-1.png
docs/dev/articles/prebuilt/2022_dmta_parent_files/figure-html/multistart-full-par-1.png
docs/dev/articles/prebuilt/2022_dmta_parent_files/figure-html/multistart-reduced-par-1.png
docs/dev/articles/prebuilt/2022_dmta_parent_files/figure-html/multistart-reduced-par-llquant-1.png
docs/dev/articles/prebuilt/2022_dmta_parent_files/figure-html/plot-saem-dfop-tc-no-ranef-k2-1.png
docs/dev/articles/prebuilt/2022_dmta_pathway.html
docs/dev/articles/prebuilt/2022_dmta_pathway_files/figure-html/saem-sforb-path-1-tc-reduced-convergence-1.png
docs/dev/articles/prebuilt/2022_dmta_pathway_files/figure-html/unnamed-chunk-2-1.png
docs/dev/articles/prebuilt/2022_dmta_pathway_files/figure-html/unnamed-chunk-3-1.png
docs/dev/articles/prebuilt/2022_dmta_pathway_files/figure-html/unnamed-chunk-4-1.png
docs/dev/articles/prebuilt/2022_dmta_pathway_files/figure-html/unnamed-chunk-5-1.png
docs/dev/articles/prebuilt/2022_dmta_pathway_files/figure-html/unnamed-chunk-6-1.png
docs/dev/articles/prebuilt/2022_dmta_pathway_files/figure-html/unnamed-chunk-7-1.png
docs/dev/articles/prebuilt/2022_dmta_pathway_files/figure-html/unnamed-chunk-8-1.png
docs/dev/articles/twa.html
docs/dev/articles/twa_files/accessible-code-block-0.0.1/empty-anchor.js
docs/dev/articles/twa_files/anchor-sections-1.0/anchor-sections.css
docs/dev/articles/twa_files/anchor-sections-1.0/anchor-sections.js
docs/dev/articles/twa_files/header-attrs-2.6/header-attrs.js
docs/dev/articles/web_only/FOCUS_Z.html
docs/dev/articles/web_only/FOCUS_Z_files/accessible-code-block-0.0.1/empty-anchor.js
docs/dev/articles/web_only/FOCUS_Z_files/anchor-sections-1.0/anchor-sections.css
docs/dev/articles/web_only/FOCUS_Z_files/anchor-sections-1.0/anchor-sections.js
docs/dev/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_1-1.png
docs/dev/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_10-1.png
docs/dev/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_11-1.png
docs/dev/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_11a-1.png
docs/dev/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_11b-1.png
docs/dev/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_2-1.png
docs/dev/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_3-1.png
docs/dev/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_5-1.png
docs/dev/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_6-1.png
docs/dev/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_7-1.png
docs/dev/articles/web_only/FOCUS_Z_files/figure-html/FOCUS_2006_Z_fits_9-1.png
docs/dev/articles/web_only/FOCUS_Z_files/header-attrs-2.6/header-attrs.js
docs/dev/articles/web_only/NAFTA_examples.html
docs/dev/articles/web_only/NAFTA_examples_files/accessible-code-block-0.0.1/empty-anchor.js
docs/dev/articles/web_only/NAFTA_examples_files/anchor-sections-1.0/anchor-sections.css
docs/dev/articles/web_only/NAFTA_examples_files/anchor-sections-1.0/anchor-sections.js
docs/dev/articles/web_only/NAFTA_examples_files/figure-html/p10-1.png
docs/dev/articles/web_only/NAFTA_examples_files/figure-html/p11-1.png
docs/dev/articles/web_only/NAFTA_examples_files/figure-html/p12a-1.png
docs/dev/articles/web_only/NAFTA_examples_files/figure-html/p12b-1.png
docs/dev/articles/web_only/NAFTA_examples_files/figure-html/p13-1.png
docs/dev/articles/web_only/NAFTA_examples_files/figure-html/p14-1.png
docs/dev/articles/web_only/NAFTA_examples_files/figure-html/p15a-1.png
docs/dev/articles/web_only/NAFTA_examples_files/figure-html/p15b-1.png
docs/dev/articles/web_only/NAFTA_examples_files/figure-html/p16-1.png
docs/dev/articles/web_only/NAFTA_examples_files/figure-html/p5a-1.png
docs/dev/articles/web_only/NAFTA_examples_files/figure-html/p5b-1.png
docs/dev/articles/web_only/NAFTA_examples_files/figure-html/p6-1.png
docs/dev/articles/web_only/NAFTA_examples_files/figure-html/p7-1.png
docs/dev/articles/web_only/NAFTA_examples_files/figure-html/p8-1.png
docs/dev/articles/web_only/NAFTA_examples_files/figure-html/p9a-1.png
docs/dev/articles/web_only/NAFTA_examples_files/figure-html/p9b-1.png
docs/dev/articles/web_only/NAFTA_examples_files/header-attrs-2.6/header-attrs.js
docs/dev/articles/web_only/benchmarks.html
docs/dev/articles/web_only/benchmarks_files/accessible-code-block-0.0.1/empty-anchor.js
docs/dev/articles/web_only/benchmarks_files/anchor-sections-1.0/anchor-sections.css
docs/dev/articles/web_only/benchmarks_files/anchor-sections-1.0/anchor-sections.js
docs/dev/articles/web_only/benchmarks_files/header-attrs-2.6/header-attrs.js
docs/dev/articles/web_only/compiled_models.html
docs/dev/articles/web_only/compiled_models_files/accessible-code-block-0.0.1/empty-anchor.js
docs/dev/articles/web_only/compiled_models_files/anchor-sections-1.0/anchor-sections.css
docs/dev/articles/web_only/compiled_models_files/anchor-sections-1.0/anchor-sections.js
docs/dev/articles/web_only/compiled_models_files/header-attrs-2.6/header-attrs.js
docs/dev/articles/web_only/dimethenamid_2018.html
docs/dev/articles/web_only/dimethenamid_2018_files/accessible-code-block-0.0.1/empty-anchor.js
docs/dev/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const-1.png
docs/dev/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const_test-1.png
docs/dev/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_tc_test-1.png
docs/dev/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_sfo_const-1.png
docs/dev/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_const-1.png
docs/dev/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc-1.png
docs/dev/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_10k-1.png
docs/dev/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_1k-1.png
docs/dev/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_const-1.png
docs/dev/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_tc-1.png
docs/dev/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const-1.png
docs/dev/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc-1.png
docs/dev/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_10k-1.png
docs/dev/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin-1.png
docs/dev/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin_10k-1.png
docs/dev/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin_moreiter-1.png
docs/dev/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_moreiter-1.png
docs/dev/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_const-1.png
docs/dev/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc-1.png
docs/dev/articles/web_only/dimethenamid_2018_files/figure-html/plot_parent_nlme-1.png
docs/dev/articles/web_only/dimethenamid_2018_files/header-attrs-2.11/header-attrs.js
docs/dev/articles/web_only/dimethenamid_2018_files/header-attrs-2.9/header-attrs.js
docs/dev/articles/web_only/multistart.html
docs/dev/articles/web_only/multistart_files/accessible-code-block-0.0.1/empty-anchor.js
docs/dev/articles/web_only/multistart_files/figure-html/unnamed-chunk-2-1.png
docs/dev/articles/web_only/multistart_files/figure-html/unnamed-chunk-3-1.png
docs/dev/articles/web_only/multistart_files/figure-html/unnamed-chunk-4-1.png
docs/dev/articles/web_only/multistart_files/figure-html/unnamed-chunk-5-1.png
docs/dev/articles/web_only/multistart_files/figure-html/unnamed-chunk-6-1.png
docs/dev/articles/web_only/saem_benchmarks.html
docs/dev/articles/web_only/saem_benchmarks_files/accessible-code-block-0.0.1/empty-anchor.js
docs/dev/authors.html
docs/dev/bootstrap-toc.css
docs/dev/bootstrap-toc.js
docs/dev/docsearch.css
docs/dev/docsearch.js
docs/dev/index.html
docs/dev/link.svg
docs/dev/news/index.html
docs/dev/pkgdown.css
docs/dev/pkgdown.js
docs/dev/pkgdown.yml
docs/dev/reference/AIC.mmkin.html
docs/dev/reference/CAKE_export.html
docs/dev/reference/D24_2014.html
docs/dev/reference/DFOP.solution-1.png
docs/dev/reference/DFOP.solution.html
docs/dev/reference/Extract.mmkin.html
docs/dev/reference/FOCUS_2006_DFOP_ref_A_to_B.html
docs/dev/reference/FOCUS_2006_FOMC_ref_A_to_F.html
docs/dev/reference/FOCUS_2006_HS_ref_A_to_F.html
docs/dev/reference/FOCUS_2006_SFO_ref_A_to_F.html
docs/dev/reference/FOCUS_2006_datasets.html
docs/dev/reference/FOMC.solution-1.png
docs/dev/reference/FOMC.solution.html
docs/dev/reference/HS.solution-1.png
docs/dev/reference/HS.solution.html
docs/dev/reference/IORE.solution-1.png
docs/dev/reference/IORE.solution.html
docs/dev/reference/NAFTA_SOP_2015-1.png
docs/dev/reference/NAFTA_SOP_2015.html
docs/dev/reference/NAFTA_SOP_Attachment-1.png
docs/dev/reference/NAFTA_SOP_Attachment.html
docs/dev/reference/Rplot001.png
docs/dev/reference/Rplot002.png
docs/dev/reference/Rplot003.png
docs/dev/reference/Rplot004.png
docs/dev/reference/Rplot005.png
docs/dev/reference/Rplot006.png
docs/dev/reference/Rplot007.png
docs/dev/reference/SFO.solution-1.png
docs/dev/reference/SFO.solution.html
docs/dev/reference/SFORB.solution-1.png
docs/dev/reference/SFORB.solution.html
docs/dev/reference/add_err-1.png
docs/dev/reference/add_err-2.png
docs/dev/reference/add_err-3.png
docs/dev/reference/add_err.html
docs/dev/reference/anova.saem.mmkin.html
docs/dev/reference/aw.html
docs/dev/reference/confint.mkinfit.html
docs/dev/reference/convergence.html
docs/dev/reference/create_deg_func.html
docs/dev/reference/dimethenamid_2018-1.png
docs/dev/reference/dimethenamid_2018-2.png
docs/dev/reference/dimethenamid_2018-3.png
docs/dev/reference/dimethenamid_2018.html
docs/dev/reference/ds_mixed-1.png
docs/dev/reference/ds_mixed.html
docs/dev/reference/endpoints.html
docs/dev/reference/example_analysis/dlls/sforb_sfo2.so
docs/dev/reference/example_analysis/example_analysis.Rmd
docs/dev/reference/example_analysis/header.tex
docs/dev/reference/example_analysis/skeleton.pdf
docs/dev/reference/example_analysis/skeleton_files/figure-latex/unnamed-chunk-11-1.pdf
docs/dev/reference/example_analysis/skeleton_files/figure-latex/unnamed-chunk-16-1.pdf
docs/dev/reference/example_analysis/skeleton_files/figure-latex/unnamed-chunk-6-1.pdf
docs/dev/reference/example_analysis/skeleton_files/figure-latex/unnamed-chunk-9-1.pdf
docs/dev/reference/experimental_data_for_UBA-1.png
docs/dev/reference/experimental_data_for_UBA.html
docs/dev/reference/f_time_norm_focus.html
docs/dev/reference/focus_soil_moisture.html
docs/dev/reference/get_deg_func.html
docs/dev/reference/hierarchical_kinetics.html
docs/dev/reference/illparms.html
docs/dev/reference/ilr.html
docs/dev/reference/index.html
docs/dev/reference/intervals.nlmixr.mmkin.html
docs/dev/reference/intervals.saem.mmkin.html
docs/dev/reference/llhist.html
docs/dev/reference/loftest-1.png
docs/dev/reference/loftest-2.png
docs/dev/reference/loftest-3.png
docs/dev/reference/loftest-4.png
docs/dev/reference/loftest-5.png
docs/dev/reference/loftest.html
docs/dev/reference/logLik.mkinfit.html
docs/dev/reference/logLik.saem.mmkin.html
docs/dev/reference/logistic.solution-1.png
docs/dev/reference/logistic.solution-2.png
docs/dev/reference/logistic.solution.html
docs/dev/reference/lrtest.mkinfit.html
docs/dev/reference/max_twa_parent.html
docs/dev/reference/mccall81_245T-1.png
docs/dev/reference/mccall81_245T.html
docs/dev/reference/mean_degparms.html
docs/dev/reference/mhmkin-1.png
docs/dev/reference/mhmkin-2.png
docs/dev/reference/mhmkin.html
docs/dev/reference/mixed-1.png
docs/dev/reference/mixed.html
docs/dev/reference/mkin_long_to_wide.html
docs/dev/reference/mkin_wide_to_long.html
docs/dev/reference/mkinds.html
docs/dev/reference/mkindsg.html
docs/dev/reference/mkinerrmin.html
docs/dev/reference/mkinerrplot-1.png
docs/dev/reference/mkinerrplot.html
docs/dev/reference/mkinfit-1.png
docs/dev/reference/mkinfit.html
docs/dev/reference/mkinmod.html
docs/dev/reference/mkinparplot-1.png
docs/dev/reference/mkinparplot.html
docs/dev/reference/mkinplot.html
docs/dev/reference/mkinpredict.html
docs/dev/reference/mkinresplot-1.png
docs/dev/reference/mkinresplot.html
docs/dev/reference/mmkin-1.png
docs/dev/reference/mmkin-2.png
docs/dev/reference/mmkin-3.png
docs/dev/reference/mmkin-4.png
docs/dev/reference/mmkin-5.png
docs/dev/reference/mmkin.html
docs/dev/reference/multistart-1.png
docs/dev/reference/multistart-2.png
docs/dev/reference/multistart.html
docs/dev/reference/nafta-1.png
docs/dev/reference/nafta.html
docs/dev/reference/nlme-1.png
docs/dev/reference/nlme-2.png
docs/dev/reference/nlme.html
docs/dev/reference/nlme.mmkin-1.png
docs/dev/reference/nlme.mmkin-2.png
docs/dev/reference/nlme.mmkin-3.png
docs/dev/reference/nlme.mmkin.html
docs/dev/reference/nlmixr.mmkin-1.png
docs/dev/reference/nlmixr.mmkin-2.png
docs/dev/reference/nlmixr.mmkin.html
docs/dev/reference/nobs.mkinfit.html
docs/dev/reference/parhist.html
docs/dev/reference/parms.html
docs/dev/reference/parplot.html
docs/dev/reference/plot.mixed.mmkin-1.png
docs/dev/reference/plot.mixed.mmkin-2.png
docs/dev/reference/plot.mixed.mmkin-3.png
docs/dev/reference/plot.mixed.mmkin-4.png
docs/dev/reference/plot.mixed.mmkin.html
docs/dev/reference/plot.mkinfit-1.png
docs/dev/reference/plot.mkinfit-2.png
docs/dev/reference/plot.mkinfit-3.png
docs/dev/reference/plot.mkinfit-4.png
docs/dev/reference/plot.mkinfit-5.png
docs/dev/reference/plot.mkinfit-6.png
docs/dev/reference/plot.mkinfit-7.png
docs/dev/reference/plot.mkinfit.html
docs/dev/reference/plot.mmkin-1.png
docs/dev/reference/plot.mmkin-2.png
docs/dev/reference/plot.mmkin-3.png
docs/dev/reference/plot.mmkin-4.png
docs/dev/reference/plot.mmkin-5.png
docs/dev/reference/plot.mmkin.html
docs/dev/reference/plot.nafta.html
docs/dev/reference/print.mmkin.html
docs/dev/reference/read_spreadsheet.html
docs/dev/reference/reexports.html
docs/dev/reference/residuals.mkinfit.html
docs/dev/reference/saem-1.png
docs/dev/reference/saem-2.png
docs/dev/reference/saem-3.png
docs/dev/reference/saem-4.png
docs/dev/reference/saem-5.png
docs/dev/reference/saem-6.png
docs/dev/reference/saem.html
docs/dev/reference/schaefer07_complex_case-1.png
docs/dev/reference/schaefer07_complex_case.html
docs/dev/reference/set_nd_nq.html
docs/dev/reference/sigma_twocomp-1.png
docs/dev/reference/sigma_twocomp.html
docs/dev/reference/status.html
docs/dev/reference/summary.mkinfit.html
docs/dev/reference/summary.mmkin.html
docs/dev/reference/summary.nlme.mmkin.html
docs/dev/reference/summary.nlmixr.mmkin.html
docs/dev/reference/summary.saem.mmkin.html
docs/dev/reference/summary_listing.html
docs/dev/reference/synthetic_data_for_UBA_2014-1.png
docs/dev/reference/synthetic_data_for_UBA_2014.html
docs/dev/reference/test_data_from_UBA_2014-1.png
docs/dev/reference/test_data_from_UBA_2014-2.png
docs/dev/reference/test_data_from_UBA_2014.html
docs/dev/reference/tex_listing.html
docs/dev/reference/tffm0.html
docs/dev/reference/transform_odeparms.html
docs/dev/reference/update.mkinfit-1.png
docs/dev/reference/update.mkinfit-2.png
docs/dev/reference/update.mkinfit.html
docs/dev/sitemap.xml
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/AIC.mmkin.html
docs/reference/CAKE_export.html
docs/reference/D24_2014.html
docs/reference/DFOP.solution-1.png
docs/reference/DFOP.solution.html
docs/reference/Extract.mmkin.html
docs/reference/FOCUS_2006_DFOP_ref_A_to_B.html
docs/reference/FOCUS_2006_FOMC_ref_A_to_F.html
docs/reference/FOCUS_2006_HS_ref_A_to_F.html
docs/reference/FOCUS_2006_SFO_ref_A_to_F.html
docs/reference/FOCUS_2006_datasets.html
docs/reference/FOMC.solution-1.png
docs/reference/FOMC.solution.html
docs/reference/HS.solution-1.png
docs/reference/HS.solution.html
docs/reference/IORE.solution-1.png
docs/reference/IORE.solution.html
docs/reference/NAFTA_SOP_2015-1.png
docs/reference/NAFTA_SOP_2015.html
docs/reference/NAFTA_SOP_Attachment-1.png
docs/reference/NAFTA_SOP_Attachment.html
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/Rplot003.png
docs/reference/Rplot004.png
docs/reference/Rplot005.png
docs/reference/Rplot006.png
docs/reference/Rplot007.png
docs/reference/SFO.solution-1.png
docs/reference/SFO.solution.html
docs/reference/SFORB.solution-1.png
docs/reference/SFORB.solution.html
docs/reference/add_err-1.png
docs/reference/add_err-2.png
docs/reference/add_err-3.png
docs/reference/add_err.html
docs/reference/anova.saem.mmkin.html
docs/reference/aw.html
docs/reference/confint.mkinfit.html
docs/reference/convergence.html
docs/reference/create_deg_func.html
docs/reference/dimethenamid_2018-1.png
docs/reference/dimethenamid_2018-2.png
docs/reference/dimethenamid_2018-3.png
docs/reference/dimethenamid_2018.html
docs/reference/ds_mixed-1.png
docs/reference/ds_mixed.html
docs/reference/endpoints.html
docs/reference/experimental_data_for_UBA-1.png
docs/reference/experimental_data_for_UBA.html
docs/reference/f_time_norm_focus.html
docs/reference/focus_soil_moisture.html
docs/reference/get_deg_func.html
docs/reference/hierarchical_kinetics.html
docs/reference/illparms.html
docs/reference/ilr.html
docs/reference/index.html
docs/reference/intervals.nlmixr.mmkin.html
docs/reference/intervals.saem.mmkin.html
docs/reference/llhist.html
docs/reference/loftest-1.png
docs/reference/loftest-2.png
docs/reference/loftest-3.png
docs/reference/loftest-4.png
docs/reference/loftest-5.png
docs/reference/loftest.html
docs/reference/logLik.mkinfit.html
docs/reference/logLik.saem.mmkin.html
docs/reference/logistic.solution-1.png
docs/reference/logistic.solution-2.png
docs/reference/logistic.solution.html
docs/reference/lrtest.mkinfit.html
docs/reference/max_twa_parent.html
docs/reference/mccall81_245T-1.png
docs/reference/mccall81_245T.html
docs/reference/mean_degparms.html
docs/reference/mhmkin-1.png
docs/reference/mhmkin-2.png
docs/reference/mhmkin.html
docs/reference/mixed-1.png
docs/reference/mixed.html
docs/reference/mkin_long_to_wide.html
docs/reference/mkin_wide_to_long.html
docs/reference/mkinds.html
docs/reference/mkindsg.html
docs/reference/mkinerrmin.html
docs/reference/mkinerrplot-1.png
docs/reference/mkinerrplot.html
docs/reference/mkinfit-1.png
docs/reference/mkinfit.html
docs/reference/mkinmod.html
docs/reference/mkinparplot-1.png
docs/reference/mkinparplot.html
docs/reference/mkinplot.html
docs/reference/mkinpredict.html
docs/reference/mkinresplot-1.png
docs/reference/mkinresplot.html
docs/reference/mkinsub.html
docs/reference/mmkin-1.png
docs/reference/mmkin-2.png
docs/reference/mmkin-3.png
docs/reference/mmkin-4.png
docs/reference/mmkin-5.png
docs/reference/mmkin.html
docs/reference/multistart-1.png
docs/reference/multistart-2.png
docs/reference/multistart.html
docs/reference/nafta-1.png
docs/reference/nafta.html
docs/reference/nlme-1.png
docs/reference/nlme-2.png
docs/reference/nlme.html
docs/reference/nlme.mmkin-1.png
docs/reference/nlme.mmkin-2.png
docs/reference/nlme.mmkin-3.png
docs/reference/nlme.mmkin-4.png
docs/reference/nlme.mmkin-5.png
docs/reference/nlme.mmkin-6.png
docs/reference/nlme.mmkin-7.png
docs/reference/nlme.mmkin.html
docs/reference/nlmixr.mmkin-1.png
docs/reference/nlmixr.mmkin-2.png
docs/reference/nlmixr.mmkin.html
docs/reference/nobs.mkinfit.html
docs/reference/parms.html
docs/reference/parplot.html
docs/reference/plot.mixed.mmkin-1.png
docs/reference/plot.mixed.mmkin-2.png
docs/reference/plot.mixed.mmkin-3.png
docs/reference/plot.mixed.mmkin-4.png
docs/reference/plot.mixed.mmkin.html
docs/reference/plot.mkinfit-1.png
docs/reference/plot.mkinfit-2.png
docs/reference/plot.mkinfit-3.png
docs/reference/plot.mkinfit-4.png
docs/reference/plot.mkinfit-5.png
docs/reference/plot.mkinfit-6.png
docs/reference/plot.mkinfit-7.png
docs/reference/plot.mkinfit.html
docs/reference/plot.mmkin-1.png
docs/reference/plot.mmkin-2.png
docs/reference/plot.mmkin-3.png
docs/reference/plot.mmkin-4.png
docs/reference/plot.mmkin-5.png
docs/reference/plot.mmkin.html
docs/reference/plot.nafta.html
docs/reference/plot.nlme.mmkin-1.png
docs/reference/plot.nlme.mmkin-2.png
docs/reference/plot.nlme.mmkin.html
docs/reference/print.mkinds.html
docs/reference/print.mkinmod.html
docs/reference/print.mmkin.html
docs/reference/read_spreadsheet.html
docs/reference/reexports.html
docs/reference/residuals.mkinfit.html
docs/reference/saem-1.png
docs/reference/saem-2.png
docs/reference/saem-3.png
docs/reference/saem-4.png
docs/reference/saem.html
docs/reference/schaefer07_complex_case-1.png
docs/reference/schaefer07_complex_case.html
docs/reference/set_nd_nq.html
docs/reference/sigma_twocomp-1.png
docs/reference/sigma_twocomp.html
docs/reference/status.html
docs/reference/summary.mkinfit.html
docs/reference/summary.mmkin.html
docs/reference/summary.nlme.mmkin.html
docs/reference/summary.nlmixr.mmkin.html
docs/reference/summary.saem.mmkin.html
docs/reference/summary_listing.html
docs/reference/synthetic_data_for_UBA_2014-1.png
docs/reference/synthetic_data_for_UBA_2014.html
docs/reference/test_data_from_UBA_2014-1.png
docs/reference/test_data_from_UBA_2014-2.png
docs/reference/test_data_from_UBA_2014.html
docs/reference/tex_listing.html
docs/reference/tffm0.html
docs/reference/transform_odeparms.html
docs/reference/update.mkinfit-1.png
docs/reference/update.mkinfit-2.png
docs/reference/update.mkinfit.html
docs/search.json
docs/sitemap.xml
inst/WORDLIST
inst/dataset_generation/D24_2014.R
inst/dataset_generation/dimethenamid_2018.R
inst/dataset_generation/ds_mixed.R
inst/dataset_generation/focus_soil_moisture.R
inst/rmarkdown/templates/hierarchical_kinetics/skeleton/header.tex
inst/rmarkdown/templates/hierarchical_kinetics/skeleton/skeleton.Rmd
inst/rmarkdown/templates/hierarchical_kinetics/template.yaml
inst/testdata/cyantraniliprole_soil_efsa_2014.xlsx
inst/testdata/fit_old_FOCUS_D.rda
inst/testdata/lambda-cyhalothrin_soil_efsa_2014.xlsx
inst/testdata/mesotrione_soil_efsa_2016.xlsx
log/build.log
log/check.log
log/check_dev.log
log/test.log
log/test_dev.log
log/tests_slow.log
man/AIC.mmkin.Rd
man/CAKE_export.Rd
man/D24_2014.Rd
man/DFOP.solution.Rd
man/Extract.mmkin.Rd
man/FOCUS_2006_DFOP_ref_A_to_B.Rd
man/FOCUS_2006_FOMC_ref_A_to_F.Rd
man/FOCUS_2006_HS_ref_A_to_F.Rd
man/FOCUS_2006_SFO_ref_A_to_F.Rd
man/FOCUS_2006_datasets.Rd
man/FOMC.solution.Rd
man/HS.solution.Rd
man/IORE.solution.Rd
man/NAFTA_SOP_2015.Rd
man/NAFTA_SOP_Attachment.Rd
man/SFO.solution.Rd
man/SFORB.solution.Rd
man/add_err.Rd
man/anova.saem.mmkin.Rd
man/aw.Rd
man/check_failed.Rd
man/confint.mkinfit.Rd
man/create_deg_func.Rd
man/dimethenamid_2018.Rd
man/ds_mixed.Rd
man/endpoints.Rd
man/experimental_data_for_UBA.Rd
man/f_time_norm_focus.Rd
man/focus_soil_moisture.Rd
man/get_deg_func.Rd
man/hierarchical_kinetics.Rd
man/illparms.Rd
man/ilr.Rd
man/intervals.saem.mmkin.Rd
man/llhist.Rd
man/loftest.Rd
man/logLik.mkinfit.Rd
man/logLik.saem.mmkin.Rd
man/logistic.solution.Rd
man/lrtest.mkinfit.Rd
man/max_twa_parent.Rd
man/mccall81_245T.Rd
man/mean_degparms.Rd
man/mhmkin.Rd
man/mixed.Rd
man/mkin_long_to_wide.Rd
man/mkin_wide_to_long.Rd
man/mkinds.Rd
man/mkindsg.Rd
man/mkinerrmin.Rd
man/mkinerrplot.Rd
man/mkinfit.Rd
man/mkinmod.Rd
man/mkinparplot.Rd
man/mkinplot.Rd
man/mkinpredict.Rd
man/mkinresplot.Rd
man/mmkin.Rd
man/multistart.Rd
man/nafta.Rd
man/nlme.Rd
man/nlme.mmkin.Rd
man/nobs.mkinfit.Rd
man/parms.Rd
man/parplot.Rd
man/plot.mixed.mmkin.Rd
man/plot.mkinfit.Rd
man/plot.mmkin.Rd
man/plot.nafta.Rd
man/read_spreadsheet.Rd
man/reexports.Rd
man/residuals.mkinfit.Rd
man/saem.Rd
man/schaefer07_complex_case.Rd
man/set_nd_nq.Rd
man/sigma_twocomp.Rd
man/status.Rd
man/summary.mkinfit.Rd
man/summary.mmkin.Rd
man/summary.nlme.mmkin.Rd
man/summary.saem.mmkin.Rd
man/summary_listing.Rd
man/synthetic_data_for_UBA_2014.Rd
man/test_data_from_UBA_2014.Rd
man/transform_odeparms.Rd
man/update.mkinfit.Rd
mkin.Rproj
tests/testthat.R
tests/testthat/AIC_exp_d_3.out
tests/testthat/FOCUS_2006_C_mkinds.txt
tests/testthat/FOCUS_2006_D.csf
tests/testthat/FOCUS_2006_D.rds
tests/testthat/NAFTA_SOP_Appendix_B.txt
tests/testthat/NAFTA_SOP_Appendix_D.txt
tests/testthat/SFO_SFO_printed.txt
tests/testthat/_snaps/multistart/llhist-for-dfop-sfo-fit.svg
tests/testthat/_snaps/multistart/llhist-for-sfo-fit.svg
tests/testthat/_snaps/multistart/mixed-model-fit-for-saem-object-with-mkin-transformations.svg
tests/testthat/_snaps/multistart/parplot-for-dfop-sfo-fit.svg
tests/testthat/_snaps/multistart/parplot-for-sfo-fit.svg
tests/testthat/_snaps/nafta/nafta-sop-appendix-b.svg
tests/testthat/_snaps/nafta/plot-nafta-analysis.svg
tests/testthat/_snaps/plot/mixed-model-fit-for-mmkin-object.svg
tests/testthat/_snaps/plot/mixed-model-fit-for-nlme-object.svg
tests/testthat/_snaps/plot/mixed-model-fit-for-saem-object-with-saemix-transformations.svg
tests/testthat/_snaps/plot/mkinerrplot-for-focus-c-sfo.svg
tests/testthat/_snaps/plot/mkinfit-plot-for-focus-c-with-defaults.svg
tests/testthat/_snaps/plot/mkinfit-plot-for-focus-c-with-residuals-like-in-gmkin.svg
tests/testthat/_snaps/plot/mkinfit-plot-for-focus-c-with-sep-true.svg
tests/testthat/_snaps/plot/mkinparplot-for-focus-c-sfo.svg
tests/testthat/_snaps/plot/mmkin-plot-for-focus-c.svg
tests/testthat/_snaps/plot/mmkin-plot-for-sfo-focus-c-and-d.svg
tests/testthat/_snaps/plot/plot-err-for-focus-d.svg
tests/testthat/_snaps/plot/plot-errmod-with-focus-c-tc.svg
tests/testthat/_snaps/plot/plot-errmod-with-focus-d-obs-eigen.svg
tests/testthat/_snaps/plot/plot-res-for-focus-c.svg
tests/testthat/_snaps/plot/plot-res-for-focus-d.svg
tests/testthat/anova_sfo_saem.txt
tests/testthat/dimethenamid_2018.txt
tests/testthat/experimental_data_for_UBA_2019_mkindsg.txt
tests/testthat/illparms_hfits_synth.txt
tests/testthat/print_dfop_nlme_1.txt
tests/testthat/print_dfop_saem_1.txt
tests/testthat/print_fits_synth_const.txt
tests/testthat/print_hfits_synth.txt
tests/testthat/print_mmkin_parent.txt
tests/testthat/print_mmkin_sfo_1_mixed.txt
tests/testthat/print_mmkin_sfo_sfo_dmta.txt
tests/testthat/print_multistart_dfop_sfo.txt
tests/testthat/print_nlmixr_saem_biphasic.txt
tests/testthat/print_sfo_saem_1_reduced.txt
tests/testthat/setup_script.R
tests/testthat/slow/test_parent_only.R
tests/testthat/slow/test_roundtrip_error_parameters.R
tests/testthat/summary_DFOP_FOCUS_C.txt
tests/testthat/summary_DFOP_FOCUS_D_deSolve.txt
tests/testthat/summary_DFOP_FOCUS_D_eigen.txt
tests/testthat/summary_dfop_nlme_1.txt
tests/testthat/summary_hfit_sfo_tc.txt
tests/testthat/summary_parent_FOCUS_2006.txt
tests/testthat/summary_saem_dfop_sfo_s.txt
tests/testthat/test_AIC.R
tests/testthat/test_CAKE_export.R
tests/testthat/test_FOCUS_D_UBA_expertise.R
tests/testthat/test_FOCUS_chi2_error_level.R
tests/testthat/test_SFORB.R
tests/testthat/test_analytical.R
tests/testthat/test_aw.R
tests/testthat/test_compiled_symbols.R
tests/testthat/test_confidence.R
tests/testthat/test_dmta.R
tests/testthat/test_error_models.R
tests/testthat/test_f_time_norm.R
tests/testthat/test_from_max_mean.R
tests/testthat/test_logistic.R
tests/testthat/test_mhmkin.R
tests/testthat/test_mixed.R
tests/testthat/test_mkinds.R
tests/testthat/test_mkinfit.R
tests/testthat/test_mkinfit_errors.R
tests/testthat/test_mkinmod.R
tests/testthat/test_mkinpredict_SFO_SFO.R
tests/testthat/test_multistart.R
tests/testthat/test_nafta.R
tests/testthat/test_nlme.R
tests/testthat/test_plot.R
tests/testthat/test_residuals.R
tests/testthat/test_saemix_parent.R
tests/testthat/test_schaefer07_complex_case.R
tests/testthat/test_set_nd.R
tests/testthat/test_summary.R
tests/testthat/test_summary_old_objects.R
tests/testthat/test_synthetic_data_for_UBA_2014.R
tests/testthat/test_tests.R
tests/testthat/test_twa.R
vignettes/FOCUS_D.html
vignettes/FOCUS_D.rmd
vignettes/FOCUS_L.html
vignettes/FOCUS_L.rmd
vignettes/dmta_parent_2022_prebuilt.rnw
vignettes/dmta_pathway_2022_prebuilt.rnw
vignettes/mesotrione_parent_2023_prebuilt.rnw
vignettes/mkin.html
vignettes/mkin.rmd
vignettes/mkin_vignettes.css
vignettes/prebuilt/2022_cyan_pathway.pdf
vignettes/prebuilt/2022_cyan_pathway.rmd
vignettes/prebuilt/2022_dmta_parent.pdf
vignettes/prebuilt/2022_dmta_parent.rmd
vignettes/prebuilt/2022_dmta_pathway.pdf
vignettes/prebuilt/2022_dmta_pathway.rmd
vignettes/prebuilt/2023_mesotrione_parent.pdf
vignettes/prebuilt/2023_mesotrione_parent.rmd
vignettes/prebuilt/references.bib
vignettes/references.bib
vignettes/twa.html
vignettes/twa.rmd
vignettes/web_only/FOCUS_Z.R
vignettes/web_only/FOCUS_Z.html
vignettes/web_only/FOCUS_Z.rmd
vignettes/web_only/NAFTA_examples.html
vignettes/web_only/NAFTA_examples.rmd
vignettes/web_only/benchmarks.R
vignettes/web_only/benchmarks.html
vignettes/web_only/benchmarks.rmd
vignettes/web_only/compiled_models.R
vignettes/web_only/compiled_models.html
vignettes/web_only/compiled_models.rmd
vignettes/web_only/dimethenamid_2018.R
vignettes/web_only/dimethenamid_2018.html
vignettes/web_only/dimethenamid_2018.rmd
vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const-1.png
vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const_test-1.png
vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_tc_test-1.png
vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_mkin_sfo_const-1.png
vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_const-1.png
vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc-1.png
vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_10k-1.png
vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_10k-2.png
vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_1k-1.png
vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_manymoreiter-1.png
vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_const-1.png
vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_tc-1.png
vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const-1.png
vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc-1.png
vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_10k-1.png
vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_manymoreiter-1.png
vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin-1.png
vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin_10k-1.png
vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc_mkin_moreiter-1.png
vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_const-1.png
vignettes/web_only/dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc-1.png
vignettes/web_only/dimethenamid_2018_files/figure-html/plot_parent_nlme-1.png
vignettes/web_only/mkin_benchmarks.rda
vignettes/web_only/multistart.html
vignettes/web_only/multistart.rmd
vignettes/web_only/saem_benchmarks.html
vignettes/web_only/saem_benchmarks.rda
vignettes/web_only/saem_benchmarks.rmd
