Files in jstockwin/EpiEstimApp

EpiEstimApp: a package to add a graphical interface around EpiEstim, which is a package to estimate time varying reproduction numbers from epidemic curves

.Rbuildignore

.github/workflows/ci-workflow.yml

.gitignore

DESCRIPTION

DEVELOPMENT.md

Dockerfile

LICENSE

NAMESPACE

NEWS.md R/runApp.R README.md decision-tree-schematic.pdf

docker-compose.yml

inst/app/datasets/IncidenceData/H1N1Maryland1918.csv

inst/app/datasets/IncidenceData/H1N1Maryland1918_imported.csv

inst/app/datasets/IncidenceData/H1N1NewYork2009.csv

inst/app/datasets/IncidenceData/H1N1NewYork2009_imported.csv

inst/app/datasets/IncidenceData/H1N1Pennsylvania2009.csv

inst/app/datasets/IncidenceData/H1N1Pennsylvania2009_imported.csv

inst/app/datasets/IncidenceData/MeaslesGermany1861.csv

inst/app/datasets/IncidenceData/MeaslesGermany1861_imported.csv

inst/app/datasets/IncidenceData/RotavirusKiribati2013.csv

inst/app/datasets/IncidenceData/RotavirusKiribati2013_imported.csv

inst/app/datasets/IncidenceData/SARSHongKong2003.csv

inst/app/datasets/IncidenceData/SARSHongKong2003_imported.csv

inst/app/datasets/IncidenceData/SmallpoxKosovo1972.csv

inst/app/datasets/IncidenceData/SmallpoxKosovo1972_imported.csv

inst/app/datasets/SIPosteriorSamples/H1N1NewYork2009_SISamples_G.csv

inst/app/datasets/SIPosteriorSamples/H1N1NewYork2009_SISamples_L.csv

inst/app/datasets/SIPosteriorSamples/H1N1NewYork2009_SISamples_W.csv

inst/app/datasets/SIPosteriorSamples/H1N1NewYork2009_SISamples_off1G.csv

inst/app/datasets/SIPosteriorSamples/H1N1NewYork2009_SISamples_off1L.csv

inst/app/datasets/SIPosteriorSamples/H1N1NewYork2009_SISamples_off1W.csv

inst/app/datasets/SIPosteriorSamples/H1N1USA2009_SISamples_G.csv

inst/app/datasets/SIPosteriorSamples/H1N1USA2009_SISamples_L.csv

inst/app/datasets/SIPosteriorSamples/H1N1USA2009_SISamples_W.csv

inst/app/datasets/SIPosteriorSamples/H1N1USA2009_SISamples_off1G.csv

inst/app/datasets/SIPosteriorSamples/H1N1USA2009_SISamples_off1L.csv

inst/app/datasets/SIPosteriorSamples/H1N1USA2009_SISamples_off1W.csv

inst/app/datasets/SIPosteriorSamples/RotavirusEcuador2011_SISamples_G.csv

inst/app/datasets/SIPosteriorSamples/RotavirusEcuador2011_SISamples_L.csv

inst/app/datasets/SIPosteriorSamples/RotavirusEcuador2011_SISamples_W.csv

inst/app/datasets/SIPosteriorSamples/RotavirusEcuador2011_SISamples_off1G.csv

inst/app/datasets/SIPosteriorSamples/RotavirusEcuador2011_SISamples_off1L.csv

inst/app/datasets/SIPosteriorSamples/RotavirusEcuador2011_SISamples_off1W.csv

inst/app/datasets/SIPosteriorSamples/generateSamples.R

inst/app/datasets/SerialIntervalData/H1N1NewYork2009.csv

inst/app/datasets/SerialIntervalData/H1N1USA2009.csv

inst/app/datasets/SerialIntervalData/RotavirusEcuador2011.csv

inst/app/datasets/SerialIntervalDistributions/H1N1Maryland1918.csv

inst/app/datasets/SerialIntervalDistributions/H1N1Pennsylvania2009.csv

inst/app/datasets/SerialIntervalDistributions/MeaslesGermany1861.csv

inst/app/datasets/SerialIntervalDistributions/SARSHongKong2003.csv

inst/app/datasets/SerialIntervalDistributions/SmallpoxKosovo1972.csv

inst/app/provision.yml

inst/app/scripts.js

inst/app/server.R inst/app/ui.R inst/app/utils.R

inst/app/www/favicon.ico

inst/app/www/styles.css

man/runEpiEstimApp.Rd tests/testthat.R tests/testthat/functions.R tests/testthat/pageObjects.R tests/testthat/testSuite001-basic-test001-testConnection.R tests/testthat/testSuite002-states-testState1.1.R tests/testthat/testSuite002-states-testState2.1.R tests/testthat/testSuite002-states-testState2.2.R tests/testthat/testSuite002-states-testState3.1.R tests/testthat/testSuite002-states-testState4.1.R tests/testthat/testSuite002-states-testState5.1.R tests/testthat/testSuite002-states-testState6.1.R tests/testthat/testSuite002-states-testState6.2.R tests/testthat/testSuite002-states-testState7.1.R tests/testthat/testSuite002-states-testState7.2.R tests/testthat/testSuite002-states-testState7.3.R tests/testthat/testSuite002-states-testState7.4.R tests/testthat/testSuite002-states-testState7.5.R tests/testthat/testSuite002-states-testState7.6.R tests/testthat/testSuite002-states-testState8.1.R tests/testthat/testSuite002-states-testState8.2.R tests/testthat/testSuite002-states-testState8.3.R tests/testthat/testSuite002-states-testState9.1.R tests/testthat/testSuite003-errors-testState2.1.R tests/testthat/testSuite003-errors-testState2.2.R tests/testthat/testSuite003-errors-testState4.1.R tests/testthat/testSuite003-errors-testState7.3.R tests/testthat/testSuite003-errors-testState7.4.R tests/testthat/testSuite003-errors-testState7.5.R tests/testthat/testSuite003-errors-testState8.1.R tests/testthat/testSuite003-errors-testState8.2.R tests/testthat/testSuite003-errors-testState8.3.R tests/testthat/testSuite003-errors-testState9.1.R tests/testthat/testSuite004.01.1-end2end-testIncidence-default.R tests/testthat/testSuite004.01.1-end2end-testIncidence-state2.1changes.R tests/testthat/testSuite004.01.2-end2end-testIncidence-state2.2changes.R tests/testthat/testSuite004.01.3-end2end-testIncidence-state4.1changes.R tests/testthat/testSuite004.02-end2end-testEndpoint8.1-default.R tests/testthat/testSuite004.02-end2end-testEndpoint8.1-state7.1changes.R tests/testthat/testSuite004.02-end2end-testEndpoint8.1-state8.1changes.R tests/testthat/testSuite004.03.1-end2end-testEndpoint9.1-default.R tests/testthat/testSuite004.03.1-end2end-testEndpoint9.1-state8.2changes.R tests/testthat/testSuite004.03.2-end2end-testEndpoint9.1-state9.1changes.R tests/testthat/testSuite004.03.3-end2end-testEndpoint9.1-state9.1changes(2).R tests/testthat/testSuite004.04-end2end-testEndpoint8.3-state8.3changes.R tests/testthat/testSuite004.05-end2end-testEndpoint7.3-state7.3changes.R tests/testthat/testSuite004.06-end2end-testEndpoint7.4-state7.4changes.R tests/testthat/testSuite004.07-end2end-testEndpoint7.5-state7.5changes.R tests/testthat/testSuite004.08-end2end-testEndpoint7.6-state7.6changes.R

jstockwin/EpiEstimApp documentation built on June 10, 2020, 10:15 p.m.