Files in jtimonen/lgpr
Longitudinal Gaussian Process Regression modeling and covariate selection

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/all-classes.R R/lgp-main.R R/lgpr-package.R R/misc-kernels.R R/misc-utils.R R/plot-helper.R R/plot-samples.R R/plot-simdata.R R/plot-spaghetti.R R/postproc-helper.R R/postproc-main.R R/predict-main.R R/preproc-disease_info.R R/preproc-input_checks.R R/preproc-main.R R/preproc-parse_prior.R R/prior-main.R R/simulate-create_F.R R/simulate-create_X.R R/simulate-main.R R/stanmodels.R R/zzz.R README.md
_config.yml
inst/include/meta_header.hpp
lgpr.Rproj
man/affected.Rd man/assess_convergence.Rd man/check_data.Rd man/check_formula.Rd man/check_hyperparameter_names.Rd man/check_unused.Rd man/compute_K_beta.Rd man/compute_kernel_matrices.Rd man/compute_predicted_components.Rd man/compute_predictions.Rd man/compute_relevances.Rd man/create_F.Rd man/create_X.Rd man/create_X_star.Rd man/create_data_plot_df.Rd man/create_predictions_plot_df1.Rd man/create_predictions_plot_df2.Rd man/create_simdata_plot_df.Rd man/create_stan_input.Rd man/create_test_points.Rd man/create_y.Rd man/disease_peaks.Rd man/drawCategorical.Rd man/drawContinuous.Rd man/drawLatentComponents.Rd man/drawMeasurementTimes.Rd man/get_case_row_mappings.Rd man/get_diseased_info.Rd man/get_function_component_samples.Rd man/get_model_dims.Rd man/get_onset_info.Rd man/get_predicted.Rd man/get_prior_params.Rd man/get_prior_type.Rd man/get_response.Rd man/get_runtime.Rd man/get_transform_type.Rd man/hyperparam_estimate.Rd man/hyperparam_samples.Rd man/kernel_bin.Rd man/kernel_cat.Rd man/kernel_ns.Rd man/kernel_se.Rd man/kernel_smoothing.Rd man/lgp.Rd man/lgp_component_names.Rd man/lgp_covariate_names.Rd man/lgp_fit.Rd man/lgp_model.Rd man/lgp_predict.Rd man/lgpfit-class.Rd man/lgpmodel-class.Rd man/lgpr-package.Rd man/likelihood_as_str.Rd man/matrix_to_df.Rd man/nameComponents.Rd man/onsetsToDiseaseAge.Rd man/parse_prior_distribution.Rd man/parse_prior_onset.Rd man/plot_components.Rd man/plot_data.Rd man/plot_inputwarp.Rd man/plot_lgpfit.Rd man/plot_onset.Rd man/plot_predictions.Rd man/plot_relevances.Rd man/plot_samples.Rd man/plot_simdata.Rd man/plot_simdata_by_component.Rd man/plot_simdata_by_individual.Rd man/postproc.Rd man/print_prior.Rd man/prior_LonGP.Rd man/prior_default.Rd man/prior_stan_to_readable.Rd man/prior_statement.Rd man/prior_to_stan.Rd man/reorder_covariates.Rd man/repvec.Rd man/rtgeom.Rd man/scaleRelevances.Rd man/separate_effects.Rd man/show_lgpfit.Rd man/show_lgpmodel.Rd man/sim_check_covariates.Rd man/sim_data_to_observed.Rd man/sim_generate_names.Rd man/simdata_colnames_pretty.Rd man/simulate_data.Rd man/simulate_kernels.Rd man/standardize_inputs.Rd man/validate_prior.Rd man/varsel.Rd man/warp_input.Rd
src/Makevars
src/Makevars.win
src/init.cpp
src/stan_files/chunks/additive_components.stan
src/stan_files/chunks/define_prior.stan
src/stan_files/chunks/functions.stan
src/stan_files/chunks/kernel_matrices.stan
src/stan_files/chunks/kernels_base.stan
src/stan_files/chunks/license.stan
src/stan_files/chunks/priors.stan
src/stan_files/lgp.hpp
src/stan_files/lgp.stan
tests/testthat.R tests/testthat/test_kernels.R tests/testthat/test_lgp.R tests/testthat/test_simulation.R tests/testthat/test_utils.R tools/make_cc.R
vignettes/.gitignore
vignettes/basic-usage.Rmd vignettes/data-simulation.Rmd vignettes/prior-specifications.Rmd
jtimonen/lgpr documentation built on April 17, 2019, 6:49 p.m.