Files in jtimonen/lgpr

Longitudinal Gaussian Process Regression

.Rbuildignore

.github/.gitignore

.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md

.github/workflows/R-CMD-check.yaml

.gitignore

.travis.yml

CONTRIBUTING.md

DESCRIPTION

NAMESPACE

NEWS.md R/aaa.R R/main-create_model.R R/main-datautil.R R/main-draw_pred.R R/main-fit_model.R R/main-get_pred.R R/main-plot_pred.R R/main-ppc.R R/main-pred.R R/main-prior_pred.R R/main-relevances.R R/main-select.R R/methods-KernelComputer.R R/methods-Prediction.R R/methods-lgpfit.R R/methods-lgpformula.R R/methods-lgpmodel.R R/methods-lgpsim.R R/misc-invgamma.R R/misc-simulate.R R/utils-argcheck.R R/utils-create_model-covariates.R R/utils-create_model-formula.R R/utils-create_model-likelihood.R R/utils-create_model-prior.R R/utils-kernel.R R/utils-kernel_reference.R R/utils-misc.R R/utils-obs_model.R R/utils-plot.R R/utils-pred.R R/zzz.R README.md

_pkgdown.yml

configure

configure.win

data/testdata_001.rda

data/testdata_002.rda

dev/README.md dev/covr.R dev/exports.R dev/lint.R dev/style.R

inst/CITATION

inst/include/stan_meta_header.hpp

inst/stan/_common/data-covariates.stan

inst/stan/_common/data-general.stan

inst/stan/_common/data-priors.stan

inst/stan/_common/functions-basisfun.stan

inst/stan/_common/functions-kernels.stan

inst/stan/_common/functions-kernels_diag.stan

inst/stan/_common/functions-prior.stan

inst/stan/_common/functions-utils.stan

inst/stan/_common/licence.stan

inst/stan/_common/params.stan

inst/stan/_common/priors.stan

inst/stan/_common/tdata.stan

inst/stan/_common/tparams.stan

inst/stan/exports.stanfunctions

inst/stan/lgp.stan

inst/stan/lgp_latent.stan

inst/stan/parameter_prior.stan

lgpr.Rproj

man/GaussianPrediction-class.Rd man/KernelComputer-class.Rd man/Prediction-class.Rd man/add_dis_age.Rd man/add_factor.Rd man/add_factor_crossing.Rd man/adjusted_c_hat.Rd man/apply_scaling.Rd man/as_character.Rd man/create_model.Rd man/create_model.covs_and_comps.Rd man/create_model.formula.Rd man/create_model.likelihood.Rd man/create_model.options.Rd man/create_model.prior.Rd man/create_plot_df.Rd man/create_scaling.Rd man/dinvgamma_stanlike.Rd man/draw_pred.Rd man/example_fit.Rd man/fit_summary.Rd man/get_draws.Rd man/get_pred.Rd man/kernel.Rd man/lgp.Rd man/lgpexpr-class.Rd man/lgpfit-class.Rd man/lgpformula-class.Rd man/lgpmodel-class.Rd man/lgpr-package.Rd man/lgprhs-class.Rd man/lgpscaling-class.Rd man/lgpsim-class.Rd man/lgpterm-class.Rd man/model_summary.Rd man/new_x.Rd man/operations.Rd man/plot_api_c.Rd man/plot_api_g.Rd man/plot_components.Rd man/plot_data.Rd man/plot_draws.Rd man/plot_inputwarp.Rd man/plot_invgamma.Rd man/plot_pred.Rd man/plot_sim.Rd man/ppc.Rd man/pred.Rd man/prior_pred.Rd man/prior_to_num.Rd man/priors.Rd man/read_proteomics_data.Rd man/relevances.Rd man/s4_generics.Rd man/sample_model.Rd man/select.Rd man/show.Rd man/sim.create_f.Rd man/sim.create_x.Rd man/sim.create_y.Rd man/sim.kernels.Rd man/simulate_data.Rd man/split.Rd man/testdata_001.Rd man/testdata_002.Rd man/validate.Rd man/var_mask.Rd man/warp_input.Rd

pkgdown/extra.css

tests/notrun/test_stan_functions_bfa.R

tests/suite/.gitignore

tests/suite/Rmd/01_sleepstudy.Rmd tests/suite/Rmd/02_orthodont.Rmd tests/suite/Rmd/03_two-age-components.Rmd tests/suite/Rmd/04_protein-liu.Rmd tests/suite/Rmd/05_protein-liu-heter.Rmd tests/suite/common.R tests/suite/models/01_sleepstudy.R tests/suite/models/02_orthodont.R tests/suite/models/03_two-age-components.R tests/suite/models/04_protein-liu.R tests/suite/models/05_protein-liu-heter.R tests/suite/run_suite.R tests/testthat.R tests/testthat/_test_main-ppc.R tests/testthat/helpers/SW.R tests/testthat/test_STAN.R tests/testthat/test_aaa.R tests/testthat/test_main-create_model.R tests/testthat/test_main-datautil.R tests/testthat/test_main-draw_pred.R tests/testthat/test_main-fit_model.R tests/testthat/test_main-plot_pred.R tests/testthat/test_main-ppc.R tests/testthat/test_main-pred.R tests/testthat/test_main-prior_pred.R tests/testthat/test_main-relevances.R tests/testthat/test_main-select.R tests/testthat/test_methods-KernelComputer.R tests/testthat/test_methods-lgpfit.R tests/testthat/test_methods-lgpmodel.R tests/testthat/test_misc-invgamma.R tests/testthat/test_misc-simulate.R tests/testthat/test_utils-argcheck.R tests/testthat/test_utils-kernel_reference.R tests/testthat/test_utils-misc.R tests/testthat/test_utils-obs_model.R tests/testthat/test_workflow.R tutorials/basic/basic.Rmd tutorials/bb/bb.Rmd

tutorials/cleanup.sh

tutorials/heter/heter.Rmd

tutorials/knit_tutorials.sh

tutorials/rna_seq/create_df.R tutorials/rna_seq/rna_seq.R tutorials/uncrt/uncrt.Rmd

vignettes/.gitignore

vignettes/math.Rmd

vignettes/references.json

jtimonen/lgpr documentation built on Oct. 12, 2023, 11:13 p.m.