R/countscyl.R

In jtlovell/PhyGenomicsData.PV2016: A data package for expression analysis in Switchgrass

#' @name countscyl
#' @title Expression counts for the cylinder drought experiment
#' @description A dataset containing the counts of 24865 genes
#' and 62 individuals, grown in cylinders at the Pickle
#' Research Center, Austin, TX in 2011. Libraries were sequenced
#' following the 3' tag-SEQ protocol in the Juenger Laboratory at the
#' University of Texas, Austin. Counts were called via a custom
#' BWA - HTSeq pipeline, curtosy of Scott Schwartz, 1-Feb 2016
#' @docType data
#' @usage countscyl
#' @format A data frame with 24865 rows and 62 variables:
#' \describe{
#'   \item{rownames}{the names of each gene, Panicum virgatum annotation (v2.1)}
#'   \item{colnames}{the names of each library, described in the
#'   accompanying infocyl dataset}
#' }
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