kendomaniac/CASC
rCASC reproducible Classification Analysis of Single Cell Sequencing Data

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kendomaniac/CASC: rCASC reproducible Classification Analysis of Single Cell Sequencing Data
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API

API for kendomaniac/CASC
rCASC reproducible Classification Analysis of Single Cell Sequencing Data

Global functions
BCscTool Man page Source code
BCscWrapper Man page Source code
anovaLike Man page Source code
autoFeature Man page Source code
autocluster4clustering Man page Source code
autoencoder Man page Source code
autoencoder4clustering Man page Source code
autoencoder4clusteringGPU Man page Source code
autoencoder4pseudoBulk Man page Source code
autoencoderAnalysis Man page Source code
autoencoderAnalysis4Clustering Man page Source code
autoencoderClustering Man page Source code
autoencoderDB Man page Source code
bootstrapsVideo Man page Source code
bulkClusters Man page Source code
ccRemove Man page Source code
cellCycle2 Man page Source code
cellrangerCount Man page Source code
cellrangerIndexing Man page Source code
checkCountDepth Man page Source code
clusterIdentification Man page Source code
clusterNgriph Man page Source code
clusterReorg Man page Source code
clusterStability Man page Source code
clusteringWADB_Wrapper Man page Source code
clusteringWA_Wrapper Man page Source code
clustersFeatures Man page Source code
cometsc Man page Source code
cometsc2 Man page Source code
counts2log Man page Source code
crossLabel Man page Source code
csvToSparse Man page Source code
deDetection Man page Source code
dePblkae Man page Source code
deTwoGroups Man page Source code
deepClustering Man page Source code
deltaFilter Man page Source code
demultiplexing Man page Source code
dimensions Man page Source code
dockerTest Man page Source code
downloadContainers Man page Source code
fastqc Man page Source code
filterZeros Man page Source code
geneVisualization Man page Source code
geneVisualization2 Man page Source code
geneVisualizationSpatial Man page Source code
genesPrioritization Man page Source code
genesSelection Man page Source code
genesUmi Man page Source code
gibbsR Man page Source code
griphBootstrap Man page Source code
gseaXLmHG Man page Source code
h5tocsv Man page Source code
harmony Man page Source code
hfc Man page Source code
houseKeep Man page Source code
impute Man page Source code
indropCounts Man page Source code
indropIndex Man page Source code
integrationCircos Man page Source code
integrationPblkae Man page Source code
integrationPsblk Man page Source code
logTransform Man page Source code
lorenzFilter Man page Source code
mergeMatrix Man page Source code
mitoRiboUmi Man page Source code
mixcr Man page Source code
mixmodels Man page Source code
nClusterEvaluationSIMLR Man page Source code
permAnalysis Man page Source code
permAnalysisGriph Man page Source code
permAnalysisSeurat Man page Source code
permutationClustering Man page Source code
permutationClusteringSHARP Man page Source code
permutationMovie Man page Source code
recatPrediction Man page Source code
runDocker Man page Source code
saver Man page Source code
scannobyGtf Man page Source code
scanpyBootstrap Man page Source code
scanpyPermutation Man page Source code
schcl Man page Source code
scnorm Man page Source code
seuratBootstrap Man page Source code
seuratIntegration Man page Source code
seuratIntegrationMulti Man page Source code
seuratIntegrationPermutation Man page Source code
seuratPCAEval Man page Source code
seuratPermutation Man page Source code
seuratPrior Man page Source code
seurat_ccycle Man page Source code
sharpBootstrap Man page Source code
simlrBootstrap Man page Source code
slogosR Man page Source code
spatialAnalysis Man page Source code
spatialAnalysis2 Man page Source code
splitClusters Man page Source code
sraDownload Man page Source code
stpipeline Man page Source code
subSetCell Man page Source code
toprnk Man page Source code
topx Man page Source code
tsneBootstrap Man page Source code
umap Man page Source code
umiNorm Man page Source code
unstableFiltering Man page Source code
vioHTMLByGenes Man page Source code
wrapperAutoencoder Man page Source code
wrapperClustersIntegration Man page Source code
wrapperMixModelsUmap Man page Source code
kendomaniac/CASC documentation built on Oct. 4, 2023, 11:10 a.m.

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