Man pages for kestrel99/occamsPmx
Pharmacometric and Pharmacokinetic Toolkit

blq_transA transform for ggplot2 with data that may be below the lower...
breaks_blq_generalGenerate breaks for measurements below the limit of...
calc_derivedCalculate derived pharmacokinetic parameters for a 1-, 2-, or...
calc_sd_1cmtCalculate C(t) for a 1-compartment linear model
calc_sd_2cmtCalculate C(t) for a 2-compartment linear model
calc_sd_3cmtCalculate C(t) for a 3-compartment linear model
calc_ss_1cmtCalculate C(t) for a 1-compartment linear model at...
calc_ss_2cmtCalculate C(t) for a 2-compartment linear model at...
calc_ss_3cmtCalculate C(t) for a 3-compartment linear model at...
count_naCount the number of NA values in a vector.
dgr_tableGenerate a summary table of descriptive data for every...
estimate_lloqEstimate the lower limit of quantification (LLOQ) from a...
fmt_signifFormat a number with the correct number of significant digits...
ftrans_blq_linearForward transformation for linear BLQ data
gcvCalculate a geometric coefficient of variation.
gcv_convertConvert geometric variance or standard deviation to a...
get_aucCalculate the area under the curve (AUC) for each subject...
get_est_tableCreate a table of model parameter estimates from a NONMEM...
get_omegaExtract variability parameter estimates from a NONMEM output...
get_probinfoExtract problem and estimation information from a NONMEM...
get_shrinkageExtract shrinkage estimates from a NONMEM output object.
get_sigmaExtract residual variability parameter estimates from a...
get_thetaExtract structural model parameter estimates and associated...
gmCalculate geometric mean
itrans_blq_linearInverse transformation for linear BLQ data
label_blqLabel axes with censoring labels for BLQ
pcvCalculate percentage coefficient of variation
pk_curveProvide concentration-time curves.
plot_distPlot a distribution as a hybrid containing a halfeye, a...
plot_nmprogressPlot NONMEM parameter estimation by iteration.
plot_scmVisualize PsN SCM output.
read_nmRead NONMEM 7.2+ output into a list of lists.
read_nm_allRead all NONMEM files for a single NONMEM run.
read_nmcovRead in the NONMEM variance-covariance matrix.
read_nmextRead NONMEM output into a list.
read_nm_multi_tableRead (single or) multiple NONMEM tables from a single file
read_nm_std_extRead a standard NONMEM extension file
read_nmtablesReads NONMEM output tables.
read_scmRead PsN SCM output into a format suitable for further use.
rnmRead NONMEM 7.2+ output into an R object.
sample_omegaSample from the multivariate normal distribution using the...
sample_sigmaSample from the multivariate normal distribution using the...
sample_uncertSample from the multivariate normal distribution to generate...
table_rtfRead NONMEM output into a list.
kestrel99/occamsPmx documentation built on Feb. 25, 2023, 8:39 a.m.