getMarkerScoresPerCellType: Return initial scores of each cell type for each cell

In khodosevichlab/CellAnnotatoR: Automated marker-based cell type annotation

Return initial scores of each cell type for each cell

Description

Return initial scores of each cell type for each cell

Usage

getMarkerScoresPerCellType(clf.data, score.info = NULL, aggr = T)

Arguments

clf.data	classification data from 'getClassificationData'
score.info	pre-calculated score info from 'getMarkerScoreInfo'
aggr	should individual gene scores be aggregated per cell type? If 'FALSE', returns list of data.frames, showing scores of each gene for each cell. Useful for debugging list of markers.

Value

data.frame with rows corresponding to cells and columns corresponding to cell types. Values are cell type scores, normalized per level of hierarchy

khodosevichlab/CellAnnotatoR documentation built on June 29, 2022, 9:12 p.m.