Files in kimberly-bastille/sin-cat
Synthetic Indicator Catalogue

.Rbuildignore
.github/.gitignore
.github/ISSUE_TEMPLATE/bug_report.yml
.github/ISSUE_TEMPLATE/catalog_submission.yml
.github/ISSUE_TEMPLATE/page_edit.yml
.github/workflows/bookdown.yaml
.github/workflows/secretScan.yml
.gitignore
DESCRIPTION
LICENSE
R/build_rmd_from_issue.R R/create_listobject.R R/creatingCatalogPages.md R/find_dataset_submissions.R R/find_rmds_not_in_book.r R/make_rmd.R R/oldScripts/BasePlot_source.R R/oldScripts/GIS_source.R R/oldScripts/build_catalog.R R/oldScripts/clean_env.R R/oldScripts/find_contributors.R R/oldScripts/find_text.R R/oldScripts/get_erddap.R R/oldScripts/parse_github_issue.R R/oldScripts/parser.R R/parse_issue.R R/pull_all_issues.r R/pull_single_issue.R R/stored_scripts/annual_sst_cycles_analysis_and_plotting.R R/stored_scripts/annual_sst_cycles_extraction_and_processing.R R/stored_scripts/bennet_analysis.R R/stored_scripts/bennet_extraction.R R/stored_scripts/catch_and_fleet_diversity_plotting.R
R/stored_scripts/ches_bay_sal_analysis.py
R/stored_scripts/ches_bay_sal_extraction.txt
R/stored_scripts/cold_pool_analysis.txt
R/stored_scripts/comm_climate_vuln_extraction.sql
R/stored_scripts/comm_rel_vuln_extraction.sql
R/stored_scripts/comm_rel_vuln_plotting.R
R/stored_scripts/conceptual_models_extraction.sql
R/stored_scripts/erddap_query_and_build_code.R R/stored_scripts/hms_landings_plotting.R R/stored_scripts/hp_indicator_plotting.R
R/stored_scripts/ich_div_analysis
R/stored_scripts/ich_div_plotting.R R/stored_scripts/inshore_survey_analysis.R R/stored_scripts/landings_extraction.R R/stored_scripts/long-term-sst-extraction.R R/stored_scripts/mab_hab_extraction.R R/stored_scripts/ne_hab_plotting.R
R/stored_scripts/observer_data_extraction.sql
R/stored_scripts/observer_data_plotting.R R/stored_scripts/occupancy_plotting.R R/stored_scripts/rec_catch_div_analysis.R R/stored_scripts/rec_div_analysis.R R/stored_scripts/rec_effort_div_analysis.R R/stored_scripts/seabird_ne_div_analysis.R R/stored_scripts/slopewater_analysis.R R/stored_scripts/species_density_analysis.R R/stored_scripts/species_distribution_analysis.R R/stored_scripts/trend_analysis.R R/stored_scripts/zooplankton_analysis.R README.md
_bookdown.yml
_common.R
_output.yml
bibliography/StateOftheEcosystem.bib
bibliography/introduction.bib
catalog.Rproj
chapters/HMS_species_distribution.rmd chapters/SAV.rmd chapters/abc_acl.rmd chapters/aggregate_biomass.rmd chapters/aquaculture.rmd chapters/atestimages.rmd chapters/bennet.rmd chapters/bottom_temp.rmd chapters/bottom_temp_comp.rmd chapters/bottom_temp_seasonal_gridded.rmd chapters/calanus_variation.rmd chapters/ch_bay_sal.rmd chapters/ch_bay_temp.rmd chapters/ches_bay_sst.rmd chapters/ches_bay_synthesis.rmd chapters/ches_bay_wq.rmd chapters/chl_pp.rmd chapters/cold_pool.rmd chapters/comdat.rmd chapters/commercial_div.rmd chapters/condition.rmd chapters/energy_density.rmd chapters/engagement.rmd chapters/exp_n.rmd chapters/forage_index.rmd chapters/glossary.Rmd chapters/gom_salmon.rmd chapters/grayseal.rmd chapters/gsi.rmd chapters/habitat_diversity.rmd chapters/habs.rmd chapters/harborporpoise.rmd chapters/heatwave.rmd chapters/heatwave_year.rmd chapters/hms_cpue.rmd chapters/hms_landings.rmd chapters/hms_stock_status.rmd chapters/long_term_sst.rmd chapters/mab_inshore_survey.rmd chapters/mass_inshore_survey.rmd chapters/narw.rmd chapters/ne_inshore_survey.rmd chapters/observation_synthesis.rmd chapters/ocean_acidification.rmd chapters/osw_survey_impact.rmd chapters/persistent_hotspots.rmd chapters/phyto_size.rmd chapters/ppr.rmd chapters/productivity_anomaly.rmd chapters/rec_hms.rmd chapters/recdat.rmd chapters/references.Rmd chapters/seabird_ne.rmd chapters/seal_pups.rmd chapters/seasonal_oisst_anom.rmd chapters/seasonal_sst_anomaly_gridded.rmd chapters/sectionHeaders/economic.rmd chapters/sectionHeaders/ltl.rmd chapters/sectionHeaders/megafauna.rmd chapters/sectionHeaders/oceanographic.rmd chapters/slopewater.rmd chapters/spawn_timing.rmd chapters/species_dist.rmd chapters/species_groupings.rmd chapters/stock_status.rmd chapters/template.Rmd chapters/thermal_habitat_area.rmd chapters/thermal_habitat_persistence.rmd chapters/timing_shifts.rmd chapters/trans_dates.rmd chapters/wbts_mesozooplankton.rmd chapters/wcr.rmd chapters/wind_dev_speed.rmd chapters/wind_port.rmd chapters/wind_revenue.rmd chapters/zoo_abundance_anom.rmd chapters/zoo_diversity.rmd
chicago-fullnote-bibliography.csl
css/_bootswatch.scss
css/_variables.scss
css/bootstrap.css
css/bootstrap.min.css
css/style.css
css/toc.css
images/journal.pone.0146756.g002.PNG
index.Rmd
packages.bib
plos.csl
preamble.tex
style.css
kimberly-bastille/sin-cat documentation built on Oct. 29, 2024, 3:08 a.m.