inst/extdata/nteeth.R
In kindlychung/collr2: QCDH
require(collr)
setwd("/media/data1/kaiyin/nteeth/")
plinkParamList = getPlinkParam( allow_no_sex = "", pheno = "nteeth.phe", covar = "", covar_name = "Sex,AgeImp", linear = "hide-covar", pheno_name = "Nteeth")
initPlinkArgs = getPlinkParam(maf = 0.01, hwe = 1e-4, geno=0.02)
taskRoutine( taskname="nteeth_s50", plinkParamList=plinkParamList, nMaxShift=50, pvalThresh=1e-3, initPlinkArgs = initPlinkArgs)
kindlychung/collr2 documentation built on May 20, 2019, 9:57 a.m.
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require(collr)
setwd("/media/data1/kaiyin/nteeth/")
plinkParamList = getPlinkParam( allow_no_sex = "", pheno = "nteeth.phe", covar = "", covar_name = "Sex,AgeImp", linear = "hide-covar", pheno_name = "Nteeth")
initPlinkArgs = getPlinkParam(maf = 0.01, hwe = 1e-4, geno=0.02)
taskRoutine( taskname="nteeth_s50", plinkParamList=plinkParamList, nMaxShift=50, pvalThresh=1e-3, initPlinkArgs = initPlinkArgs)
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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