API for kingaa/pomp
Statistical Inference for Partially Observed Markov Processes

Global functions
Abc-class Man page
Cbuilder Source code
Csnippet Man page Source code
Csnippet-class Man page
Forecast Man page
LondonYorke Man page
Mif2-class Man page
Pfilter-class Man page
Pmcmc-class Man page
Pomp-class Man page
[,listies-method Man page
[-listies Man page
abc Man page
abc,ANY-method Man page
abc,abcd_pomp-method Man page
abc,data.frame-method Man page
abc,missing-method Man page
abc,pomp-method Man page
abc,probed_pomp-method Man page
abc-data.frame Man page
abc-pomp Man page
abc.diagnostics Source code
abc.internal Source code
abcList-class Man page
accumulators Man page
accumvars Man page
as,Csnippet-method Man page
as,bsmcd_pomp-method Man page
as,kalmand_pomp-method Man page
as,listies-method Man page
as,pfilterd_pomp-method Man page
as,probed_pomp-method Man page
as-csnippet Man page
as.character.Csnippet Source code
as.data.frame Man page
as.data.frame.bsmcd_pomp Man page Source code
as.data.frame.kalmand_pomp Man page Source code
as.data.frame.pfilterd_pomp Man page Source code
as.data.frame.pomp Man page Source code
as.data.frame.probed_pomp Man page Source code
as.pomp Man page Source code
bake Man page Source code
basic_probes Man page
blowflies Man page
blowflies1 Man page Source code
blowflies2 Man page Source code
bsflu Man page
bsmc.plot Source code
bsmc2 Man page
bsmc2,ANY-method Man page
bsmc2,data.frame-method Man page
bsmc2,missing-method Man page
bsmc2,pomp-method Man page
bsmc2-data.frame Man page
bsmc2-pomp Man page
bsmc2.internal Source code
bspline.basis Man page Source code
bsplines Man page
c.Abc Man page Source code
c.Mif2 Man page Source code
c.Pfilter Man page Source code
c.Pmcmc Man page Source code
c.Pomp Man page Source code
cleanForC Source code
coef Man page
coef,ANY-method Man page
coef,listies-method Man page
coef,missing-method Man page
coef,objfun-method Man page
coef,pomp-method Man page
coef-listies Man page
coef-objfun Man page
coef-pomp Man page
coef<- Man page
coef<-,ANY-method Man page
coef<-,missing-method Man page
coef<-,pomp-method Man page
coef<--pomp Man page
coerce,Csnippet,character-method Man page
coerce,bsmcd_pomp,data.frame-method Man page
coerce,kalmand_pomp,data.frame-method Man page
coerce,listies,data.frame-method Man page
coerce,objfun,data.frame-method Man page
coerce,objfun,pomp-method Man page
coerce,pfilterd_pomp,data.frame-method Man page
coerce,pomp,data.frame-method Man page
coerce,probe_match_objfun,probed_pomp-method Man page
coerce,probed_pomp,data.frame-method Man page
coerce,spect_match_objfun,spectd_pomp-method Man page
coerce-objfun-data.frame Man page
coerce-objfun-pomp Man page
coerce-pomp-data.frame Man page
coerce-probe_match_objfun-probed_pomp Man page
coerce-spect_match_objfun-spectd_pomp Man page
compute.spect.data Source code
compute.spect.sim Source code
concat Man page
concat,Abc-method Man page
concat,Mif2-method Man page
concat,Pfilter-method Man page
concat,Pmcmc-method Man page
concat,Pomp-method Man page
cond.logLik Man page
cond.logLik,ANY-method Man page
cond.logLik,bsmcd_pomp-method Man page
cond.logLik,kalmand_pomp-method Man page
cond.logLik,missing-method Man page
cond.logLik,pfilterd_pomp-method Man page
cond.logLik-bsmcd_pomp Man page
cond.logLik-kalmand_pomp Man page
cond.logLik-pfilterd_pomp Man page
continue Man page
continue,ANY-method Man page
continue,abcd_pomp-method Man page
continue,mif2d_pomp-method Man page
continue,missing-method Man page
continue,pmcmcd_pomp-method Man page
continue-abcd_pomp Man page
continue-mif2d_pomp Man page
continue-pmcmcd_pomp Man page
conv.rec Man page Source code
covar_time_warning Source code
covariate.table.internal Source code
covariate_table Man page
covariate_table,ANY-method Man page
covariate_table,character-method Man page
covariate_table,missing-method Man page
covariate_table,numeric-method Man page
covariate_table-character,covariate_table,character-method Man page
covariate_table-numeric,covariate_table,numeric-method Man page
covmat Man page
covmat,ANY-method Man page
covmat,abcList-method Man page
covmat,abcd_pomp-method Man page
covmat,missing-method Man page
covmat,pmcmcList-method Man page
covmat,pmcmcd_pomp-method Man page
covmat,probed_pomp-method Man page
covmat-abcList Man page
covmat-abcd_pomp Man page
covmat-pmcmcList Man page
covmat-pmcmcd_pomp Man page
covmat-probed_pomp Man page
covmat.internal Source code
dacca Man page Source code
deprecated Man page
design Man page
deulermultinom Man page Source code
discrete.time.sim Man page Source code
discrete_time Man page Source code
distributions Man page
dmeasure Man page
dmeasure,ANY-method Man page
dmeasure,missing-method Man page
dmeasure,pomp-method Man page
dmeasure-pomp Man page
dmeasure.internal Source code
dmeasure_spec Man page
dprior Man page
dprior,ANY-method Man page
dprior,missing-method Man page
dprior,pomp-method Man page
dprior-pomp Man page
dprior.internal Source code
dprocess Man page
dprocess,ANY-method Man page
dprocess,missing-method Man page
dprocess,pomp-method Man page
dprocess-pomp Man page
dprocess.internal Source code
dprocess_spec Man page
eakf Man page
eakf,ANY-method Man page
eakf,data.frame-method Man page
eakf,missing-method Man page
eakf,pomp-method Man page
eakf-data.frame Man page
eakf-pomp Man page
eakf.internal Source code
eff.sample.size Man page
eff.sample.size,ANY-method Man page
eff.sample.size,bsmcd_pomp-method Man page
eff.sample.size,missing-method Man page
eff.sample.size,pfilterd_pomp-method Man page
eff.sample.size-bsmcd_pomp Man page
eff.sample.size-pfilterd_pomp Man page
enkf Man page
enkf,ANY-method Man page
enkf,data.frame-method Man page
enkf,missing-method Man page
enkf,pomp-method Man page
enkf-data.frame Man page
enkf-pomp Man page
enkf.internal Source code
euler Man page Source code
euler.sim Man page Source code
ewcitmeas Man page
ewmeas Man page
expit Man page Source code
filter.mean Man page
filter.mean,ANY-method Man page
filter.mean,kalmand_pomp-method Man page
filter.mean,missing-method Man page
filter.mean,pfilterd_pomp-method Man page
filter.mean-kalmand_pomp Man page
filter.mean-pfilterd_pomp Man page
filter.traj Man page
filter.traj,ANY-method Man page
filter.traj,missing-method Man page
filter.traj,pfilterList-method Man page
filter.traj,pfilterd_pomp-method Man page
filter.traj,pmcmcList-method Man page
filter.traj,pmcmcd_pomp-method Man page
filter.traj-pfilterList Man page
filter.traj-pfilterd_pomp Man page
filter.traj-pmcmcList Man page
filter.traj-pmcmcd_pomp Man page
forecast Man page
forecast,ANY-method Man page
forecast,kalmand_pomp-method Man page
forecast,missing-method Man page
forecast-kalmand_pomp Man page
freeze Man page Source code
get_covariate_names Source code
gillespie Man page Source code
gillespie.hl.sim Man page Source code
gillespie.sim Man page Source code
gillespie_hl Man page Source code
gompertz Man page Source code
has_partrans Source code
hitch Man page Source code
inv_log_barycentric Man page Source code
invalid_names Source code
kalman Man page
kalmanFilter Source code
listies Man page
listies-class Man page
load Man page
logLik Man page
logLik,ANY-method Man page
logLik,bsmcd_pomp-method Man page
logLik,kalmand_pomp-method Man page
logLik,listies-method Man page
logLik,missing-method Man page
logLik,nlf_objfun-method Man page
logLik,objfun-method Man page
logLik,pfilterd_pomp-method Man page
logLik,pmcmcd_pomp-method Man page
logLik,probed_pomp-method Man page
logLik,spect_match_objfun-method Man page
logLik-bsmcd_pomp Man page
logLik-kalmand_pomp Man page
logLik-nlf_objfun Man page
logLik-objfun Man page
logLik-pfilterd_pomp Man page
logLik-pmcmcd_pomp Man page
logLik-probed_pomp Man page
logLik-spect_match_objfun Man page
log_barycentric Man page Source code
logit Man page Source code
logmeanexp Man page Source code
lookup Man page Source code
make.lags.nlf Source code
make.tensorbasis Source code
map Man page Source code
measles Man page
melt Man page
mif2 Man page
mif2,ANY-method Man page
mif2,data.frame-method Man page
mif2,mif2d_pomp-method Man page
mif2,missing-method Man page
mif2,pfilterd_pomp-method Man page
mif2,pomp-method Man page
mif2-data.frame Man page
mif2-mif2d_pomp Man page
mif2-pfilterd_pomp Man page
mif2-pomp Man page
mif2.cooling Source code
mif2.diagnostics Source code
mif2.internal Source code
mif2.pfilter Source code
mif2List-class Man page
mvn.diag.rw Man page Source code
mvn.rw Man page Source code
mvn.rw.adaptive Man page Source code
nlf Man page
nlf.internal Source code
nlf.lql Source code
nlf_objfun Man page
nlf_objfun,ANY-method Man page
nlf_objfun,data.frame-method Man page
nlf_objfun,missing-method Man page
nlf_objfun,nlf_objfun-method Man page
nlf_objfun,pomp-method Man page
nlf_objfun-data.frame Man page
nlf_objfun-nlf_objfun Man page
nlf_objfun-pomp Man page
nlfof.internal Source code
nonfinite_dmeasure_error Source code
objfun Man page
obs Man page
obs,pomp-method Man page
obs-pomp Man page
onAttach Source code
onestep Man page Source code
onestep.dens Man page Source code
onestep.sim Man page Source code
ou2 Man page Source code
pStop Man page Source code
pStop_ Man page Source code
pWarn Man page Source code
pWarn_ Man page Source code
parameter_trans Man page
parameter_trans,ANY,ANY-method Man page
parameter_trans,ANY,missing-method Man page
parameter_trans,Csnippet,Csnippet-method Man page
parameter_trans,NULL,NULL-method Man page
parameter_trans,character,character-method Man page
parameter_trans,function,function-method Man page
parameter_trans,missing,ANY-method Man page
parameter_trans,missing,missing-method Man page
parameter_trans,pomp_fun,pomp_fun-method Man page
parameter_trans-Csnippet,Csnippet Man page
parameter_trans-character,character Man page
parameter_trans-function,function Man page
parameter_trans-missing,missing Man page
parameter_trans.internal Source code
parmat Man page Source code
partrans Man page
partrans,ANY-method Man page
partrans,missing-method Man page
partrans,pomp-method Man page
partrans-pomp Man page
partrans.internal Source code
parus Man page
periodic.bspline.basis Man page Source code
perturbn.kernel.sd Source code
pfilter Man page
pfilter,ANY-method Man page
pfilter,data.frame-method Man page
pfilter,missing-method Man page
pfilter,objfun-method Man page
pfilter,pfilterd_pomp-method Man page
pfilter,pomp-method Man page
pfilter-data.frame Man page
pfilter-objfun Man page
pfilter-pfilterd_pomp Man page
pfilter-pomp Man page
pfilter.internal Source code
pfilterList-class Man page
pfilterd_pomp Man page
pfilterd_pomp-class Man page
plot Man page
plot,ANY-method Man page
plot,Abc-method Man page
plot,Mif2-method Man page
plot,Pmcmc-method Man page
plot,abcList-method Man page
plot,abcd_pomp-method Man page
plot,bsmcd_pomp-method Man page
plot,mif2List-method Man page
plot,mif2d_pomp-method Man page
plot,missing-method Man page
plot,pfilterd_pomp-method Man page
plot,pmcmcList-method Man page
plot,pmcmcd_pomp-method Man page
plot,pomp-method Man page
plot,pomp_plottable-method Man page
plot,probed_pomp-method Man page
plot,spectd_pomp-method Man page
plot-Abc Man page
plot-Mif2 Man page
plot-Pmcmc Man page
plot-bsmcd_pomp Man page
plot-pfilterd_pomp Man page
plot-pomp Man page
plot-probed_pomp Man page
plot-spectd_pomp Man page
plot_spect.internal Source code
plotpomp.internal Source code
pmcmc Man page
pmcmc,ANY-method Man page
pmcmc,data.frame-method Man page
pmcmc,missing-method Man page
pmcmc,pfilterd_pomp-method Man page
pmcmc,pmcmcd_pomp-method Man page
pmcmc,pomp-method Man page
pmcmc-data.frame Man page
pmcmc-pfilterd_pomp Man page
pmcmc-pmcmcd_pomp Man page
pmcmc-pomp Man page
pmcmc.internal Source code
pmcmcList-class Man page
pmof.internal Source code
pomp Man page Source code
pomp-class Man page
pomp.detrend Source code
pomp.internal Source code
pomp2,package Man page
pomp2-package Man page
pompCompile Source code
pompList-class Man page
pompLoad Man page
pompLoad,pomp-method Man page
pompLoad-pomp Man page
pompLoad.internal Source code
pompUnload Man page
pompUnload,pomp-method Man page
pompUnload-pomp Man page
pompUnload.internal Source code
pomp_fun Man page
pomp_fun,Csnippet-method Man page
pomp_fun,character-method Man page
pomp_fun,function-method Man page
pomp_fun,missing-method Man page
pomp_fun,pomp_fun-method Man page
pred.mean Man page
pred.mean,ANY-method Man page
pred.mean,kalmand_pomp-method Man page
pred.mean,missing-method Man page
pred.mean,pfilterd_pomp-method Man page
pred.mean-kalmand_pomp Man page
pred.mean-pfilterd_pomp Man page
pred.var Man page
pred.var,ANY-method Man page
pred.var,missing-method Man page
pred.var,pfilterd_pomp-method Man page
pred.var-pfilterd_pomp Man page
print Man page
print,listies-method Man page
print,pomp_fun-method Man page
print,unshowable-method Man page
prior_spec Man page
probe Man page
probe,ANY-method Man page
probe,data.frame-method Man page
probe,missing-method Man page
probe,objfun-method Man page
probe,pomp-method Man page
probe,probe_match_objfun-method Man page
probe,probed_pomp-method Man page
probe-data.frame Man page
probe-objfun Man page
probe-pomp Man page
probe-probe_match_obfjun Man page
probe-probed_pomp Man page
probe.acf Man page Source code
probe.ccf Man page Source code
probe.eval Source code
probe.internal Source code
probe.marginal Man page Source code
probe.match Man page
probe.mean Man page Source code
probe.median Man page Source code
probe.nlar Man page Source code
probe.period Man page Source code
probe.quantile Man page Source code
probe.sd Man page Source code
probe.var Man page Source code
probe_objfun Man page
probe_objfun,ANY-method Man page
probe_objfun,data.frame-method Man page
probe_objfun,missing-method Man page
probe_objfun,pomp-method Man page
probe_objfun,probe_match_objfun-method Man page
probe_objfun,probed_pomp-method Man page
probe_objfun-data.frame Man page
probe_objfun-pomp Man page
probe_objfun-probe_match_objfun Man page
probe_objfun-probed_pomp Man page
probeplot.internal Source code
profileDesign Man page Source code
proposals Man page
rbf.basis Source code
rbf.knots Source code
reexports Man page
render Source code
reqd_arg Source code
resample Man page
reulermultinom Man page Source code
reuman.kernel Source code
rgammawn Man page Source code
ricker Man page Source code
rinit Man page
rinit,ANY-method Man page
rinit,missing-method Man page
rinit,pomp-method Man page
rinit-pomp Man page
rinit.internal Source code
rinit_spec Man page
rmeasure Man page
rmeasure,ANY-method Man page
rmeasure,missing-method Man page
rmeasure,pomp-method Man page
rmeasure-pomp Man page
rmeasure.internal Source code
rmeasure_spec Man page
rprior Man page
rprior,ANY-method Man page
rprior,missing-method Man page
rprior,pomp-method Man page
rprior-pomp Man page
rprior.internal Source code
rproc_plugin Source code
rprocess Man page
rprocess,ANY-method Man page
rprocess,missing-method Man page
rprocess,pomp-method Man page
rprocess-pomp Man page
rprocess.internal Source code
rprocess_spec Man page
rw.sd Man page
rw2 Man page Source code
safecall Source code
sannbox Man page Source code
show Man page
show,abcd_pomp-method Man page
show,bsmcd_pomp-method Man page
show,covartable-method Man page
show,discreteRprocPlugin-method Man page
show,eulerRprocPlugin-method Man page
show,gillespieRprocPlugin-method Man page
show,kalmand_pomp-method Man page
show,listies-method Man page
show,mapPlugin-method Man page
show,mif2d_pomp-method Man page
show,nlfd_pomp-method Man page
show,onestepRprocPlugin-method Man page
show,partransPlugin-method Man page
show,pfilterd_pomp-method Man page
show,pmcmcd_pomp-method Man page
show,pomp-method Man page
show,pomp_fun-method Man page
show,probed_pomp-method Man page
show,rprocPlugin-method Man page
show,skelPlugin-method Man page
show,spectd_pomp-method Man page
show,unshowable-method Man page
show,vectorfieldPlugin-method Man page
simulate Man page
simulate,data.frame-method Man page
simulate,missing-method Man page
simulate,objfun-method Man page
simulate,pomp-method Man page
simulate-data.frame Man page
simulate-missing Man page
simulate-objfun Man page
simulate-pomp Man page
simulate.internal Source code
sir Man page Source code
sir2 Man page Source code
sir_models Man page
skel_plugin Source code
skeleton Man page
skeleton,ANY-method Man page
skeleton,missing-method Man page
skeleton,pomp-method Man page
skeleton-pomp Man page
skeleton.internal Source code
skeleton_spec Man page
sliceDesign Man page Source code
smof.internal Source code
sobol Source code
sobolDesign Man page Source code
solibs<- Man page
solibs<-,pomp-method Man page
solibs<--pomp Man page
spect Man page
spect,ANY-method Man page
spect,data.frame-method Man page
spect,missing-method Man page
spect,objfun-method Man page
spect,pomp-method Man page
spect,spect_match_objfun-method Man page
spect,spectd_pomp-method Man page
spect-data.frame Man page
spect-objfun Man page
spect-pomp Man page
spect-spect_match_objfun Man page
spect-spectd_pomp Man page
spect.discrep Source code
spect.internal Source code
spect.match Man page
spect_objfun Man page
spect_objfun,ANY-method Man page
spect_objfun,data.frame-method Man page
spect_objfun,missing-method Man page
spect_objfun,pomp-method Man page
spect_objfun,spect_match_objfun-method Man page
spect_objfun,spectd_pomp-method Man page
spect_objfun-data.frame Man page
spect_objfun-pomp Man page
spect_objfun-spect_match_objfun Man page
spect_objfun-spectd_pomp Man page
spy Man page
spy,ANY-method Man page
spy,missing-method Man page
spy,pomp-method Man page
srcDir Source code
states Man page
states,pomp-method Man page
states-pomp Man page
stew Man page Source code
summary Man page
summary,objfun-method Man page
summary,probed_pomp-method Man page
summary,spectd_pomp-method Man page
summary-objfun Man page
summary-probed_pomp Man page
summary-spectd_pomp Man page
systematic_resample Man page Source code
time Man page
time,ANY-method Man page
time,missing-method Man page
time,pomp-method Man page
time-pomp Man page
time.repl.internal Source code
time<- Man page
time<-,pomp-method Man page
time<--pomp Man page
timezero Man page
timezero,ANY-method Man page
timezero,missing-method Man page
timezero,pomp-method Man page
timezero-pomp Man page
timezero<- Man page
timezero<-,ANY-method Man page
timezero<-,missing-method Man page
timezero<-,pomp-method Man page
timezero<--pomp Man page
tmof.internal Source code
traces Man page
traces,ANY-method Man page
traces,Abc-method Man page
traces,Mif2-method Man page
traces,Pmcmc-method Man page
traces,abcList-method Man page
traces,abcd_pomp-method Man page
traces,mif2List-method Man page
traces,mif2d_pomp-method Man page
traces,missing-method Man page
traces,pmcmcList-method Man page
traces,pmcmcd_pomp-method Man page
traces-Abc Man page
traces-Mif2 Man page
traces-Pmcmc Man page
traces-abcList Man page
traces-abcd_pomp Man page
traces-mif2List Man page
traces-mif2d_pomp Man page
traces-pmcmcList Man page
traces-pmcmcd_pomp Man page
traces.internal Source code
traj.match Man page
traj.match.loglik Source code
traj_objfun Man page
traj_objfun,ANY-method Man page
traj_objfun,data.frame-method Man page
traj_objfun,missing-method Man page
traj_objfun,pomp-method Man page
traj_objfun,traj_match_objfun-method Man page
traj_objfun-data.frame Man page
traj_objfun-pomp Man page
traj_objfun-traj_match_objfun Man page
trajectory Man page
trajectory,ANY-method Man page
trajectory,missing-method Man page
trajectory,pomp-method Man page
trajectory,traj_match_objfun-method Man page
trajectory-pomp Man page
trajectory-traj_match_objfun Man page
trajectory.internal Source code
transformations Man page
undef_method Source code
undefined Man page
undefined,pomp_fun-method Man page
undefined,rprocPlugin-method Man page
undefined,skelPlugin-method Man page
userdata Man page
values Man page Source code
vectorfield Man page Source code
verhulst Man page Source code
window Man page
window,pomp-method Man page
window-pomp Man page
workhorses Man page
kingaa/pomp documentation built on Oct. 3, 2018, 8:01 a.m.