Files in kjohnsen/MMAPPR2
Mutation Mapping Analysis Pipeline for Pooled RNA-Seq

.BBSoptions
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/MMAPPR2.R R/aicc_loess.R R/all_classes.R R/all_generics.R R/candidates.R R/distance.R R/main.R R/output.R R/peaks.R R/s4_methods.R README.md
inst/CITATION
man/MMAPPR2.Rd man/MmapprData-class.Rd man/MmapprData-getters.Rd man/MmapprParam-functions.Rd man/MmapprParam.Rd man/calculateDistance.Rd man/generateCandidates.Rd man/loessFit.Rd man/mmappr.Rd man/outputMmapprData.Rd man/peakRefinement.Rd man/prePeak.Rd man/tempOutputFolder.Rd tests/testthat.R tests/testthat/helper-functions.R tests/testthat/test_candidates.R
tests/testthat/test_data/bam_files/README
tests/testthat/test_data/bam_files/zy14_dummy.bam
tests/testthat/test_data/bam_files/zy14_dummy.bam.bai
tests/testthat/test_data/objects/post_calcdist_dummy_md.RDS
tests/testthat/test_data/objects/post_loess_dummy_md.RDS
tests/testthat/test_data/objects/post_peakref_dummy_md.RDS
tests/testthat/test_data/objects/post_prepeak_dummy_md.RDS
tests/testthat/test_data/objects/vep_flags.RDS
tests/testthat/test_distance.R tests/testthat/test_loess.R tests/testthat/test_main.R tests/testthat/test_output.R tests/testthat/test_peaks.R vignettes/MMAPPR2.Rmd
kjohnsen/MMAPPR2 documentation built on June 13, 2019, 8:52 p.m.