Man pages for kjohnsen/MMAPPR2
Mutation Mapping Analysis Pipeline for Pooled RNA-Seq
| calculateDistance | Read BAM files and generate Euclidean distance data |
| generateCandidates | Generate potential causative mutations and consequences in... |
| loessFit | Perform optimized Loess regression for each chromosome |
| mmappr | Mutation Mapping Analysis Pipeline for Pooled RNA-Seq |
| MMAPPR2 | Mutation Mapping Analysis Pipeline for Pooled RNA-seq |
| MmapprData-class | MmapprData Class |
| MmapprData-getters | MmapprData Getters |
| MmapprParam | MmapprParam Class and Constructor |
| MmapprParam-functions | MmapprParam Getters and Setters |
| outputMmapprData | Generate plots and tables from MMAPPR2 data |
| peakRefinement | Characterize Euclidean distance peaks using resampling... |
| prePeak | Identify chromosomes containing peaks |
| tempOutputFolder | Generate temporary output folder |
