Files in kkrismer/idr2d
Irreproducible Discovery Rate for Genomic Interactions Data

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

NEWS

R/auxiliary.R R/data.R R/hic.R R/main.R R/visualization.R R/zzz.R README.md

data/chiapet.rda

data/chipseq.rda

data/hic.rda

inst/CITATION

man/calculate_midpoint_distance1d.Rd man/calculate_midpoint_distance2d.Rd man/calculate_relative_overlap1d.Rd man/calculate_relative_overlap2d.Rd man/chiapet.Rd man/chipseq.Rd man/determine_anchor_overlap.Rd man/draw_hic_contact_map.Rd man/draw_idr_distribution_histogram.Rd man/draw_rank_idr_scatterplot.Rd man/draw_value_idr_scatterplot.Rd man/establish_bijection.Rd man/establish_bijection1d.Rd man/establish_bijection2d.Rd man/establish_overlap1d.Rd man/establish_overlap2d.Rd man/estimate_idr.Rd man/estimate_idr1d.Rd man/estimate_idr2d.Rd man/estimate_idr2d_hic.Rd man/hic.Rd man/parse_hic_pro_matrix.Rd man/parse_juicer_matrix.Rd man/preprocess.Rd man/remove_nonstandard_chromosomes1d.Rd man/remove_nonstandard_chromosomes2d.Rd tests/testthat.R tests/testthat/test-anchor-overlap.R tests/testthat/test-distances.R tests/testthat/test-hic.R tests/testthat/test-main.R tests/testthat/test-visualization.R

vignettes/bibliography.bib

vignettes/idr1d.Rmd vignettes/idr2d.Rmd

kkrismer/idr2d documentation built on Feb. 7, 2024, 2:23 p.m.

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