API for kkrismer/transite
RNA-binding protein motif analysis

Global functions
.RBPMotif Man page
.SpectrumScore Man page
.onLoad Source code
RBPMotif-class Man page
SpectrumScore-class Man page
cachedScoreSequencesHelper Source code
calculateKmerEnrichment Man page Source code
calculateKmerScores Man page Source code
calculateLocalConsistency Man page Source code
calculateMotifEnrichment Man page Source code
calculateTranscriptMC Man page Source code
checkKmers Man page Source code
computeKmerEnrichment Man page Source code
computeMotifScore Man page Source code
createKmerMotif Man page Source code
createMatrixMotif Man page Source code
drawVolcanoPlot Man page Source code
empiricalEnrichmentMeanCDF Man page Source code
ge Man page
generateIUPACByKmers Man page Source code
generateIUPACByMatrix Man page Source code
generateKmers Man page Source code
generateKmersFromIUPAC Man page Source code
generatePermutedEnrichments Man page Source code
geometricMean Man page Source code
getLockObject Source code
getMotifById Man page Source code
getMotifByRBP Man page Source code
getMotifs Man page Source code
getPPM Man page Source code
homopolymerCorrection Man page Source code
initIUPAClookupTable Man page Source code
kmers.enrichment Man page
lock Source code
lookupKmerScores Man page Source code
motifHeptamers Man page
motifHeptamers,RBPMotif-method Man page
motifHexamers Man page
motifHexamers,RBPMotif-method Man page
motifIUPAC Man page
motifIUPAC,RBPMotif-method Man page
motifId Man page
motifId,RBPMotif-method Man page
motifLength Man page
motifLength,RBPMotif-method Man page
motifMatrix Man page
motifMatrix,RBPMotif-method Man page
motifRbps Man page
motifRbps,RBPMotif-method Man page
motifSource Man page
motifSource,RBPMotif-method Man page
motifSpecies Man page
motifSpecies,RBPMotif-method Man page
motifType Man page
motifType,RBPMotif-method Man page
motifs Man page
motifsMetaInfo Man page Source code
pCombine Man page Source code
permTestGeometricMean Man page Source code
plot,RBPMotif,ANY-method Man page
plot,RBPMotif-method Man page
plot,SpectrumScore,ANY-method Man page
plot,SpectrumScore-method Man page
readMotifCache Source code
runKmerSPMA Man page Source code
runKmerTSMA Man page Source code
runMatrixSPMA Man page Source code
runMatrixTSMA Man page Source code
scoreSequences Man page Source code
scoreSequencesHelper Source code
scoreSpectrum Man page Source code
scoreTranscripts Man page Source code
scoreTranscriptsSingleMotif Man page Source code
setMotifs Man page Source code
show,RBPMotif-method Man page
show,SpectrumScore-method Man page
spectrumAdjRSquared Man page
spectrumAdjRSquared,SpectrumScore-method Man page
spectrumClassifier Man page Source code
spectrumConsistencyScore Man page
spectrumConsistencyScore,SpectrumScore-method Man page
spectrumConsistencyScoreN Man page
spectrumConsistencyScoreN,SpectrumScore-method Man page
spectrumConsistencyScorePValue Man page
spectrumConsistencyScorePValue,SpectrumScore-method Man page
spectrumDegree Man page
spectrumDegree,SpectrumScore-method Man page
spectrumFStatistic Man page
spectrumFStatistic,SpectrumScore-method Man page
spectrumFStatisticPValue Man page
spectrumFStatisticPValue,SpectrumScore-method Man page
spectrumResiduals Man page
spectrumResiduals,SpectrumScore-method Man page
spectrumSlope Man page
spectrumSlope,SpectrumScore-method Man page
subdivideData Man page Source code
toy.motif.matrix Man page
transite Man page
transite-package Man page
unlock Source code
writeMotifCache Source code
kkrismer/transite documentation built on Nov. 6, 2019, 12:10 p.m.