R/myplotps.R
In kristinbakka/generalizedPELT:
## Functions for plot and save
## From 21c03.R
# Function for plot
myplot <- function(data,name,runs,ylab="Total cost per length",newframe=FALSE){
#myplot(data=l.plot[[i]],name=names(l.plot)[i],runs)
if(newframe){set.window(FALSE)}
n.line=length(unique(data$variable))
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
return(ggplot(data=data,
#aes(x=n, y=value, group=variable,colour=variable)) +
aes(x=n, y=value, colour=variable)) +
geom_point(aes(group = variable))+
geom_line(aes(group = variable))+theme_minimal()+
#coord_cartesian(ylim=c(0,1.10))+
#scale_fill_continuous()+
scale_color_manual("Method",values=mypal)+
guides(color=guide_legend(title="penalty"))+
labs(x="n",y=ylab,title=paste("runs",runs,name))
)
}
barplot.single <- function(data,name,runs,ylab="Total cost per length",newframe=FALSE){
data$delta=as.character(data$delta)
if(newframe){set.window(FALSE)}
n.line=length(unique(data$delta))
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
return(ggplot(data=data, aes(x=ncpts,y=Freq,
color=delta,group=delta)) +
#geom_point(position=position_dodge(width = 0.9))+
geom_point()+
geom_line(linetype="dotted")+
theme_minimal()+
scale_color_manual(values=mypal)+
# scale_colour_gradient()+
labs(x="m",colour=expression(Delta),title=paste("runs",runs,name),y = "Proportion", fill = "Delta")+
#coord_flip(ylim = c(0,1))
coord_cartesian(ylim=c(0,1))
)
}
barplot2.single <-function(data,name,runs,ylab="Total cost per length",newframe=FALSE){
data$ncpts=as.character(data$ncpts)
data$delta=as.numeric(data$delta)
if(newframe){set.window(FALSE)}
n.line=length(unique(data$ncpts))
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
return(ggplot(data=data, aes(x=delta,y=Freq,
color=ncpts,group=ncpts)) +
#geom_point(position=position_dodge(width = 0.9))+
geom_point()+
geom_line()+
theme_minimal()+
scale_color_manual(values=mypal)+
# scale_colour_gradient()+
labs(x=expression(Delta),colour="m",title=paste("runs",runs,name),y = "Proportion", fill = "Delta")+
#coord_flip(ylim = c(0,1))
coord_cartesian(ylim=c(0,1))
)
}
barplot2.double <-function(data,name,runs,newframe=FALSE){
data$ncpts=as.character(data$ncpts)
data$delta=as.numeric(data$delta)
if(newframe){set.window(FALSE)}
n.line=length(unique(data$ncpts))
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
return(ggplot(data=data, aes(x=delta,y=Freq,
color=ncpts,group=interaction(ncpts,Method),
shape=Method, linetype=Method)) +
#geom_point(position=position_dodge(width = 0.9))+
scale_shape_manual(name="Method",values=c(4,19))+
geom_point()+
geom_line()+
theme_minimal()+
scale_color_manual(values=mypal)+
#scale_color_discrete()+
# scale_linetype_discrete()+
scale_linetype_manual(values=c(3,1))+
# scale_x_continuous(breaks = as.integer(dataset.breaks))+
# scale_x_discrete(breaks = dataset.breaks)+
#scale_shape()+
# scale_colour_gradient()+
theme(legend.spacing.y = unit(0, "cm"))+
theme(legend.margin=margin(t = 0, unit='cm'))+
labs(x=expression(Delta),colour="m",title=paste("runs",runs,name),y = "Proportion", fill = "Delta")+
#coord_flip(ylim = c(0,1))
coord_cartesian(ylim=c(0,1))
)
}
barplot2.several <-function(data,name,runs,newframe=FALSE){
data$ncpts=as.character(data$ncpts)
data$delta=as.numeric(data$delta)
if(newframe){set.window(FALSE)}
n.line=length(unique(data$ncpts))
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
return(ggplot(data=data, aes(x=delta,y=Freq,
color=ncpts,group=interaction(ncpts,Method),
shape=Method, linetype=Method)) +
#geom_point(position=position_dodge(width = 0.9))+
scale_shape(name="Method")+
geom_point()+
geom_line()+
theme_minimal()+
scale_color_manual(values=mypal)+
#scale_color_discrete()+
# scale_linetype_discrete()+
scale_linetype()+
# scale_x_continuous(breaks = as.integer(dataset.breaks))+
# scale_x_discrete(breaks = dataset.breaks)+
#scale_shape()+
# scale_colour_gradient()+
theme(legend.spacing.y = unit(0, "cm"))+
theme(legend.margin=margin(t = 0, unit='cm'))+
labs(x=expression(Delta),colour="m",title=paste("runs",runs,name),y = "Proportion", fill = "Delta")+
#coord_flip(ylim = c(0,1))
coord_cartesian(ylim=c(0,1))
)
}
barplot3.several <-function(data,name,runs,newframe=FALSE){
data$ncpts=as.character(data$ncpts)
data$delta=as.numeric(data$delta)
if(newframe){set.window(FALSE)}
n.line=length(unique(data$Method))
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
return(ggplot(data=data, aes(x=delta,y=Freq,
color=Method,group=interaction(ncpts,Method),
shape=Method, linetype=ncpts)) +
#geom_point(position=position_dodge(width = 0.9))+
scale_shape(name="Method")+
geom_point()+
geom_line()+
theme_minimal()+
scale_color_manual(name="Method",values=mypal)+
#scale_color_discrete()+
# scale_linetype_discrete()+
scale_linetype(name="m")+
# scale_x_continuous(breaks = as.integer(dataset.breaks))+
# scale_x_discrete(breaks = dataset.breaks)+
#scale_shape()+
# scale_colour_gradient()+
theme(legend.spacing.y = unit(0, "cm"))+
theme(legend.margin=margin(t = 0, unit='cm'))+
labs(x=expression(Delta),colour="m",title=paste("runs",runs,name),y = "Proportion", fill = "Delta")+
#coord_flip(ylim = c(0,1))
coord_cartesian(ylim=c(0,1))
)
}
hitprop.plot.v01 <-function(data,name,runs,newframe=FALSE,stip=FALSE){
if(newframe){set.window(FALSE)}
n.line=2
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
if(stip){
return(ggplot(data=data,
aes(x=delta, y=Value, colour=Type,shape=Method,linetype=Type)) +
geom_line()+theme_minimal()+
geom_point()+
scale_color_manual(
name="Type",
values=wes_palette( name="Cavalcanti"),
labels=c("Exact", "Correct m"))+
scale_linetype_discrete(
name="Type",
labels=c("Exact", "Correct m"))+
scale_shape_manual(name="Method",
values=c(19,4))+
ylim(0,1)+
labs(x=expression(Delta),y="Proportion",title=paste("runs",runs,name))
)}
return(ggplot(data=data,
aes(x=delta, y=Value, colour=Type,shape=Method)) +
geom_line()+theme_minimal()+
geom_point()+
scale_color_manual(
name="Type",
values=wes_palette( name="Cavalcanti"),
labels=c("Exact", "Correct m"))+
scale_shape_manual(name="Method",
values=c(19,4))+
ylim(0,1)+
labs(x=expression(Delta),y="Proportion",title=paste("runs",runs,name))
)
}
hitprop.plot.v01.multiple <-function(data,name,runs,newframe=FALSE,stip=FALSE){
if(newframe){set.window(FALSE)}
n.line=2
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
return(ggplot(data=data,
aes(x=delta, y=Value, colour=Type,shape=Method)) +
geom_line()+theme_minimal()+
geom_point()+
scale_color_manual(
name="Type",
values=wes_palette( name="Cavalcanti"),
labels=c("Exact", "Correct m"))+
scale_shape_discrete(name="Method",
solid=TRUE)+
ylim(0,1)+
labs(x=expression(Delta),y="Proportion",title=paste("runs",runs,name))
)
}
hitprop.plot.v02 <-function(data,name,runs,newframe=FALSE,stip=FALSE){
if(newframe){set.window(FALSE)}
n.line=2
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
if(stip){
return(ggplot(data=data,
aes(x=delta, y=Value, colour=Type,shape=Method,linetype=Type)) +
geom_line()+theme_minimal()+
geom_point()+
scale_color_manual(
name="Type",
values=wes_palette( name="Cavalcanti"),
labels=c("Correct m"))+
scale_linetype_discrete(
name="Type",
labels=c("Correct m"))+
scale_shape_manual(name="Method",
values=c(19,4))+
ylim(0,1)+
labs(x=expression(Delta),y="Proportion",title=paste("runs",runs,name))
)}
return(ggplot(data=data,
aes(x=delta, y=Value, colour=Type,shape=Method)) +
geom_line()+theme_minimal()+
geom_point()+
scale_color_manual(
name="Type",
values=wes_palette( name="Cavalcanti"),
labels=c("Correct m"))+
scale_shape_manual(name="Method",
values=c(19,4))+
ylim(0,1)+
labs(x=expression(Delta),y="Proportion",title=paste("runs",runs,name))
)
}
hitprop.plot <-function(data,name,runs,newframe=FALSE,stip=FALSE){
## This is wrong
warning("This is the wrong plot, I got confused when I tried to make haste <3.")
if(newframe){set.window(FALSE)}
n.line=2
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
if(stip){
return(ggplot(data=data,
aes(x=delta, y=Value, colour=Type,shape=Method,linetype=Type)) +
geom_line()+theme_minimal()+
geom_point()+
scale_color_manual(
name="Method",
values=wes_palette( name="Cavalcanti"),
labels=c("PELT","BinSeg"))+
scale_linetype_discrete(
name="Method",
values=wes_palette( name="Cavalcanti"),
labels=c("PELT","BinSeg"))+
scale_shape_manual(name="Type",
values=c(19,4),
labels=c("Exact", "Correct m"))+
ylim(0,1)+
labs(x=expression(Delta),y="Proportion",title=paste("runs",runs,name))
)}
return(ggplot(data=data,
aes(x=delta, y=Value, colour=Type,shape=Method)) +
geom_line()+theme_minimal()+
geom_point()+
scale_color_manual(
name="Method",
values=wes_palette( name="Cavalcanti"),
labels=c("PELT","BinSeg"))+
scale_shape_manual(name="Type",
values=c(19,4),
labels=c("Exact", "Correct m"))+
ylim(0,1)+
labs(x=expression(Delta),y="Proportion",title=paste("runs",runs,name))
)
}
myplot.m <- function(data,name="",runs,ylab="Hit prop",newframe=FALSE){
data$n=as.character(data$n)
data$n=as.integer(data$n)
#myplot(data=l.plot[[i]],name=names(l.plot)[i],runs)
if(newframe){set.window(FALSE)}
n.line=length(unique(data$m))
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
return(
ggplot(data=data,
#aes(x=n, y=value, group=n,colour=n)) +
aes(x=m, y=value, colour=n)) +theme_minimal()+
geom_point(aes(group = n))+
#geom_line(aes(group = n))+
#coord_cartesian(ylim=c(0,1.10))+
#scale_color_manual("Method",values=mypal)+
scale_fill_continuous()+
#guides(color=guide_legend(title="n"))+
labs(x="m",y=ylab,title=paste("runs",runs,name))
)
}
# Function for plot
myplot.vars.g <- function(data,name,runs){
#myplot(data=l.plot[[i]],name=names(l.plot)[i],runs)
data$variable=as.integer(data$variable)
data$g=as.character(data$g)
#colnames(data)[2]="pen"
return(ggplot(data=data,
aes(x=variable, y=value, group=g, colour=g)) +
geom_point()+geom_line()+theme_minimal()+
#coord_cartesian(ylim=c(0,1.10))+
# scale_color_manual("Method",values=PuBu)+
guides(color=guide_legend(title="g"))+
labs(x="penalty",y="Variability in total cost per length",title=paste("runs",runs,name))
)
}
# Function for plot
myplot.vars <- function(data,name,runs){
#myplot(data=l.plot[[i]],name=names(l.plot)[i],runs)
return(ggplot(data=data,
aes(x=pen, y=value)) +
geom_point()+geom_line()+theme_minimal()+
#coord_cartesian(ylim=c(0,1.10))+
# scale_color_manual("Method",values=wes_palette( name="Cavalcanti"))+
#guides(color=guide_legend(title="nnodes"))+
labs(x="pen",y="Variability in total cost per length",title=paste("runs",runs,name))
)
}
# Function for save
mysave <- function(plot,variety, save=FALSE,n,runs,filenam,m=0,wd=0){
setwd("C:/Users/Kristin/Documents/v18-master/pelt-package-v01/plot")
name=paste0(filenam,"-m",m,"-n",n,"-r",runs,"-",variety) #i.e. "p21-r50-mean","p21-r50-meanvar"
if(save){
ggsave(plot=plot, paste(c(name,".pdf"), collapse = ""), device="pdf")
return("The pdf was saved.")
}
return("The pdf was not saved.")
}
mysave.proj <- function(plot,filenam,m=0,runs,variety,folder="plot-06-part2/session0",save=FALSE,wd=TRUE){
# opens new window, plots in it, shuts it
#-(what is now the active window?)
set.window(FALSE)
my.plot<- plot + labs(subtitle=paste0("m= ",m,", runs=",runs,", variety=",variety))
clean.plot<- plot + ggtitle("")
workdir="C:/Users/Kristin/Documents/v18-master/pelt-package-v01/"
if(wd){setwd(paste0(workdir,folder))}
name=paste0(filenam,"-m",m,"-r",runs,"-",variety) #i.e. "p21-r50-mean","p21-r50-meanvar"
if(save){
ggsave(plot=plot, paste0(name,".pdf"), device="pdf", width=5)
ggsave(plot=plot+ggtitle(""), paste0("clean-",name,".pdf"), width=5, device="pdf")
dev.off()
return("The pdf was saved.")
}
return("The pdf was not saved.")
}
kristinbakka/generalizedPELT documentation built on May 14, 2019, 6 a.m.
R Package Documentation
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## Functions for plot and save
## From 21c03.R
# Function for plot
myplot <- function(data,name,runs,ylab="Total cost per length",newframe=FALSE){
#myplot(data=l.plot[[i]],name=names(l.plot)[i],runs)
if(newframe){set.window(FALSE)}
n.line=length(unique(data$variable))
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
return(ggplot(data=data,
#aes(x=n, y=value, group=variable,colour=variable)) +
aes(x=n, y=value, colour=variable)) +
geom_point(aes(group = variable))+
geom_line(aes(group = variable))+theme_minimal()+
#coord_cartesian(ylim=c(0,1.10))+
#scale_fill_continuous()+
scale_color_manual("Method",values=mypal)+
guides(color=guide_legend(title="penalty"))+
labs(x="n",y=ylab,title=paste("runs",runs,name))
)
}
barplot.single <- function(data,name,runs,ylab="Total cost per length",newframe=FALSE){
data$delta=as.character(data$delta)
if(newframe){set.window(FALSE)}
n.line=length(unique(data$delta))
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
return(ggplot(data=data, aes(x=ncpts,y=Freq,
color=delta,group=delta)) +
#geom_point(position=position_dodge(width = 0.9))+
geom_point()+
geom_line(linetype="dotted")+
theme_minimal()+
scale_color_manual(values=mypal)+
# scale_colour_gradient()+
labs(x="m",colour=expression(Delta),title=paste("runs",runs,name),y = "Proportion", fill = "Delta")+
#coord_flip(ylim = c(0,1))
coord_cartesian(ylim=c(0,1))
)
}
barplot2.single <-function(data,name,runs,ylab="Total cost per length",newframe=FALSE){
data$ncpts=as.character(data$ncpts)
data$delta=as.numeric(data$delta)
if(newframe){set.window(FALSE)}
n.line=length(unique(data$ncpts))
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
return(ggplot(data=data, aes(x=delta,y=Freq,
color=ncpts,group=ncpts)) +
#geom_point(position=position_dodge(width = 0.9))+
geom_point()+
geom_line()+
theme_minimal()+
scale_color_manual(values=mypal)+
# scale_colour_gradient()+
labs(x=expression(Delta),colour="m",title=paste("runs",runs,name),y = "Proportion", fill = "Delta")+
#coord_flip(ylim = c(0,1))
coord_cartesian(ylim=c(0,1))
)
}
barplot2.double <-function(data,name,runs,newframe=FALSE){
data$ncpts=as.character(data$ncpts)
data$delta=as.numeric(data$delta)
if(newframe){set.window(FALSE)}
n.line=length(unique(data$ncpts))
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
return(ggplot(data=data, aes(x=delta,y=Freq,
color=ncpts,group=interaction(ncpts,Method),
shape=Method, linetype=Method)) +
#geom_point(position=position_dodge(width = 0.9))+
scale_shape_manual(name="Method",values=c(4,19))+
geom_point()+
geom_line()+
theme_minimal()+
scale_color_manual(values=mypal)+
#scale_color_discrete()+
# scale_linetype_discrete()+
scale_linetype_manual(values=c(3,1))+
# scale_x_continuous(breaks = as.integer(dataset.breaks))+
# scale_x_discrete(breaks = dataset.breaks)+
#scale_shape()+
# scale_colour_gradient()+
theme(legend.spacing.y = unit(0, "cm"))+
theme(legend.margin=margin(t = 0, unit='cm'))+
labs(x=expression(Delta),colour="m",title=paste("runs",runs,name),y = "Proportion", fill = "Delta")+
#coord_flip(ylim = c(0,1))
coord_cartesian(ylim=c(0,1))
)
}
barplot2.several <-function(data,name,runs,newframe=FALSE){
data$ncpts=as.character(data$ncpts)
data$delta=as.numeric(data$delta)
if(newframe){set.window(FALSE)}
n.line=length(unique(data$ncpts))
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
return(ggplot(data=data, aes(x=delta,y=Freq,
color=ncpts,group=interaction(ncpts,Method),
shape=Method, linetype=Method)) +
#geom_point(position=position_dodge(width = 0.9))+
scale_shape(name="Method")+
geom_point()+
geom_line()+
theme_minimal()+
scale_color_manual(values=mypal)+
#scale_color_discrete()+
# scale_linetype_discrete()+
scale_linetype()+
# scale_x_continuous(breaks = as.integer(dataset.breaks))+
# scale_x_discrete(breaks = dataset.breaks)+
#scale_shape()+
# scale_colour_gradient()+
theme(legend.spacing.y = unit(0, "cm"))+
theme(legend.margin=margin(t = 0, unit='cm'))+
labs(x=expression(Delta),colour="m",title=paste("runs",runs,name),y = "Proportion", fill = "Delta")+
#coord_flip(ylim = c(0,1))
coord_cartesian(ylim=c(0,1))
)
}
barplot3.several <-function(data,name,runs,newframe=FALSE){
data$ncpts=as.character(data$ncpts)
data$delta=as.numeric(data$delta)
if(newframe){set.window(FALSE)}
n.line=length(unique(data$Method))
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
return(ggplot(data=data, aes(x=delta,y=Freq,
color=Method,group=interaction(ncpts,Method),
shape=Method, linetype=ncpts)) +
#geom_point(position=position_dodge(width = 0.9))+
scale_shape(name="Method")+
geom_point()+
geom_line()+
theme_minimal()+
scale_color_manual(name="Method",values=mypal)+
#scale_color_discrete()+
# scale_linetype_discrete()+
scale_linetype(name="m")+
# scale_x_continuous(breaks = as.integer(dataset.breaks))+
# scale_x_discrete(breaks = dataset.breaks)+
#scale_shape()+
# scale_colour_gradient()+
theme(legend.spacing.y = unit(0, "cm"))+
theme(legend.margin=margin(t = 0, unit='cm'))+
labs(x=expression(Delta),colour="m",title=paste("runs",runs,name),y = "Proportion", fill = "Delta")+
#coord_flip(ylim = c(0,1))
coord_cartesian(ylim=c(0,1))
)
}
hitprop.plot.v01 <-function(data,name,runs,newframe=FALSE,stip=FALSE){
if(newframe){set.window(FALSE)}
n.line=2
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
if(stip){
return(ggplot(data=data,
aes(x=delta, y=Value, colour=Type,shape=Method,linetype=Type)) +
geom_line()+theme_minimal()+
geom_point()+
scale_color_manual(
name="Type",
values=wes_palette( name="Cavalcanti"),
labels=c("Exact", "Correct m"))+
scale_linetype_discrete(
name="Type",
labels=c("Exact", "Correct m"))+
scale_shape_manual(name="Method",
values=c(19,4))+
ylim(0,1)+
labs(x=expression(Delta),y="Proportion",title=paste("runs",runs,name))
)}
return(ggplot(data=data,
aes(x=delta, y=Value, colour=Type,shape=Method)) +
geom_line()+theme_minimal()+
geom_point()+
scale_color_manual(
name="Type",
values=wes_palette( name="Cavalcanti"),
labels=c("Exact", "Correct m"))+
scale_shape_manual(name="Method",
values=c(19,4))+
ylim(0,1)+
labs(x=expression(Delta),y="Proportion",title=paste("runs",runs,name))
)
}
hitprop.plot.v01.multiple <-function(data,name,runs,newframe=FALSE,stip=FALSE){
if(newframe){set.window(FALSE)}
n.line=2
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
return(ggplot(data=data,
aes(x=delta, y=Value, colour=Type,shape=Method)) +
geom_line()+theme_minimal()+
geom_point()+
scale_color_manual(
name="Type",
values=wes_palette( name="Cavalcanti"),
labels=c("Exact", "Correct m"))+
scale_shape_discrete(name="Method",
solid=TRUE)+
ylim(0,1)+
labs(x=expression(Delta),y="Proportion",title=paste("runs",runs,name))
)
}
hitprop.plot.v02 <-function(data,name,runs,newframe=FALSE,stip=FALSE){
if(newframe){set.window(FALSE)}
n.line=2
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
if(stip){
return(ggplot(data=data,
aes(x=delta, y=Value, colour=Type,shape=Method,linetype=Type)) +
geom_line()+theme_minimal()+
geom_point()+
scale_color_manual(
name="Type",
values=wes_palette( name="Cavalcanti"),
labels=c("Correct m"))+
scale_linetype_discrete(
name="Type",
labels=c("Correct m"))+
scale_shape_manual(name="Method",
values=c(19,4))+
ylim(0,1)+
labs(x=expression(Delta),y="Proportion",title=paste("runs",runs,name))
)}
return(ggplot(data=data,
aes(x=delta, y=Value, colour=Type,shape=Method)) +
geom_line()+theme_minimal()+
geom_point()+
scale_color_manual(
name="Type",
values=wes_palette( name="Cavalcanti"),
labels=c("Correct m"))+
scale_shape_manual(name="Method",
values=c(19,4))+
ylim(0,1)+
labs(x=expression(Delta),y="Proportion",title=paste("runs",runs,name))
)
}
hitprop.plot <-function(data,name,runs,newframe=FALSE,stip=FALSE){
## This is wrong
warning("This is the wrong plot, I got confused when I tried to make haste <3.")
if(newframe){set.window(FALSE)}
n.line=2
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
if(stip){
return(ggplot(data=data,
aes(x=delta, y=Value, colour=Type,shape=Method,linetype=Type)) +
geom_line()+theme_minimal()+
geom_point()+
scale_color_manual(
name="Method",
values=wes_palette( name="Cavalcanti"),
labels=c("PELT","BinSeg"))+
scale_linetype_discrete(
name="Method",
values=wes_palette( name="Cavalcanti"),
labels=c("PELT","BinSeg"))+
scale_shape_manual(name="Type",
values=c(19,4),
labels=c("Exact", "Correct m"))+
ylim(0,1)+
labs(x=expression(Delta),y="Proportion",title=paste("runs",runs,name))
)}
return(ggplot(data=data,
aes(x=delta, y=Value, colour=Type,shape=Method)) +
geom_line()+theme_minimal()+
geom_point()+
scale_color_manual(
name="Method",
values=wes_palette( name="Cavalcanti"),
labels=c("PELT","BinSeg"))+
scale_shape_manual(name="Type",
values=c(19,4),
labels=c("Exact", "Correct m"))+
ylim(0,1)+
labs(x=expression(Delta),y="Proportion",title=paste("runs",runs,name))
)
}
myplot.m <- function(data,name="",runs,ylab="Hit prop",newframe=FALSE){
data$n=as.character(data$n)
data$n=as.integer(data$n)
#myplot(data=l.plot[[i]],name=names(l.plot)[i],runs)
if(newframe){set.window(FALSE)}
n.line=length(unique(data$m))
if(n.line>4){
mypal=wes_palette("Cavalcanti", n.line, type = "continuous")
}else{
mypal=wes_palette( name="Cavalcanti")
}
return(
ggplot(data=data,
#aes(x=n, y=value, group=n,colour=n)) +
aes(x=m, y=value, colour=n)) +theme_minimal()+
geom_point(aes(group = n))+
#geom_line(aes(group = n))+
#coord_cartesian(ylim=c(0,1.10))+
#scale_color_manual("Method",values=mypal)+
scale_fill_continuous()+
#guides(color=guide_legend(title="n"))+
labs(x="m",y=ylab,title=paste("runs",runs,name))
)
}
# Function for plot
myplot.vars.g <- function(data,name,runs){
#myplot(data=l.plot[[i]],name=names(l.plot)[i],runs)
data$variable=as.integer(data$variable)
data$g=as.character(data$g)
#colnames(data)[2]="pen"
return(ggplot(data=data,
aes(x=variable, y=value, group=g, colour=g)) +
geom_point()+geom_line()+theme_minimal()+
#coord_cartesian(ylim=c(0,1.10))+
# scale_color_manual("Method",values=PuBu)+
guides(color=guide_legend(title="g"))+
labs(x="penalty",y="Variability in total cost per length",title=paste("runs",runs,name))
)
}
# Function for plot
myplot.vars <- function(data,name,runs){
#myplot(data=l.plot[[i]],name=names(l.plot)[i],runs)
return(ggplot(data=data,
aes(x=pen, y=value)) +
geom_point()+geom_line()+theme_minimal()+
#coord_cartesian(ylim=c(0,1.10))+
# scale_color_manual("Method",values=wes_palette( name="Cavalcanti"))+
#guides(color=guide_legend(title="nnodes"))+
labs(x="pen",y="Variability in total cost per length",title=paste("runs",runs,name))
)
}
# Function for save
mysave <- function(plot,variety, save=FALSE,n,runs,filenam,m=0,wd=0){
setwd("C:/Users/Kristin/Documents/v18-master/pelt-package-v01/plot")
name=paste0(filenam,"-m",m,"-n",n,"-r",runs,"-",variety) #i.e. "p21-r50-mean","p21-r50-meanvar"
if(save){
ggsave(plot=plot, paste(c(name,".pdf"), collapse = ""), device="pdf")
return("The pdf was saved.")
}
return("The pdf was not saved.")
}
mysave.proj <- function(plot,filenam,m=0,runs,variety,folder="plot-06-part2/session0",save=FALSE,wd=TRUE){
# opens new window, plots in it, shuts it
#-(what is now the active window?)
set.window(FALSE)
my.plot<- plot + labs(subtitle=paste0("m= ",m,", runs=",runs,", variety=",variety))
clean.plot<- plot + ggtitle("")
workdir="C:/Users/Kristin/Documents/v18-master/pelt-package-v01/"
if(wd){setwd(paste0(workdir,folder))}
name=paste0(filenam,"-m",m,"-r",runs,"-",variety) #i.e. "p21-r50-mean","p21-r50-meanvar"
if(save){
ggsave(plot=plot, paste0(name,".pdf"), device="pdf", width=5)
ggsave(plot=plot+ggtitle(""), paste0("clean-",name,".pdf"), width=5, device="pdf")
dev.off()
return("The pdf was saved.")
}
return("The pdf was not saved.")
}
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