API for kylebittinger/ecofuncs
Alpha and Beta Diversity Measures
| Global functions | |
|---|---|
| abundance_jaccard | Man page |
| abundance_sorenson | Man page |
| alpha_diversities | Man page |
| berger_parker_d | Man page |
| beta_diversities | Man page |
| binomial_deviance | Man page |
| bray_curtis | Man page |
| bray_curtis_balanced | Man page |
| bray_curtis_components | Man page |
| bray_curtis_gradient | Man page |
| brillouin_d | Man page |
| canberra | Man page |
| chebyshev | Man page |
| chord | Man page |
| clark_coefficient_of_divergence | Man page |
| correlation_distance | Man page |
| cosine_distance | Man page |
| cy_dissimilarity | Man page |
| diversity_measures | Man page |
| dominance | Man page |
| euclidean | Man page |
| faith_pd | Man page |
| faith_tree | Man page |
| generalized_unifrac | Man page |
| geodesic_metric | Man page |
| hamming | Man page |
| heip_e | Man page |
| hellinger | Man page |
| horn_morisita | Man page |
| information_unifrac | Man page |
| invsimpson | Man page |
| jaccard | Man page |
| jaccard_components | Man page |
| jaccard_nestedness | Man page |
| jaccard_turnover | Man page |
| kempton_taylor_q | Man page |
| kulczynski_first | Man page |
| kulczynski_second | Man page |
| kullback_leibler_divergence | Man page |
| leprieur_tree | Man page |
| lozupone_panel_a | Man page |
| lozupone_panel_b | Man page |
| lozupone_tree | Man page |
| manhattan | Man page |
| margalef | Man page |
| match_to_tree | Man page |
| mcintosh_d | Man page |
| mcintosh_e | Man page |
| mean_character_difference | Man page |
| menhinick | Man page |
| minkowski | Man page |
| modified_mean_character_difference | Man page |
| morisita | Man page |
| phylogenetic_alpha_diversities | Man page |
| phylogenetic_beta_diversities | Man page |
| phylosor | Man page |
| phylosor_nestedness | Man page |
| phylosor_turnover | Man page |
| pielou_e | Man page |
| richness | Man page |
| rms_distance | Man page |
| rogers_tanimoto | Man page |
| russel_rao | Man page |
| ruzicka | Man page |
| ruzicka_balanced | Man page |
| ruzicka_gradient | Man page |
| shannon | Man page |
| simpson | Man page |
| simpson_e | Man page |
| sokal_michener | Man page |
| sokal_sneath | Man page |
| sorenson | Man page |
| sorenson_nestedness | Man page |
| sorenson_turnover | Man page |
| strong | Man page |
| unifrac | Man page |
| unifrac_components | Man page |
| unweighted_unifrac | Man page |
| unweighted_unifrac_nestedness | Man page |
| unweighted_unifrac_turnover | Man page |
| variance_adjusted_unifrac | Man page |
| weighted_kulczynski_second | Man page |
| weighted_normalized_unifrac | Man page |
| weighted_unifrac | Man page |
| yule_dissimilarity | Man page |
