Man pages for kylebittinger/ecofuncs
Alpha and Beta Diversity Measures
| abundance_jaccard | Chao's abundance-weighted indices |
| berger_parker_d | Berger-Parker dominance |
| binomial_deviance | Binomial deviance and CY index of dissimilarity |
| bray_curtis | Bray-Curtis distance |
| bray_curtis_components | Balanced variation and abundance gradient components for... |
| canberra | Canberra and related distances |
| chebyshev | Chebyshev distance |
| correlation_distance | Correlation and cosine distance |
| diversity_measures | Diversity measures implemented |
| euclidean | Euclidean and related distances |
| faith_pd | Faith's phylogenetic diversity |
| faith_tree | Example data for Faith's phylogenetic diversity |
| hamming | Hamming distance |
| jaccard | Beta diversity for presence/absence data |
| jaccard_components | Nestedness and turnover components for presence/absence data |
| kempton_taylor_q | Kempton-Taylor Q index |
| kullback_leibler_divergence | Kullback-Leibler divergence |
| leprieur_tree | Example data for phylogenetic nestedness and turnover... |
| lozupone_tree | Example data for UniFrac distance |
| manhattan | Manhattan and related distances |
| margalef | Margalef's richness index |
| match_to_tree | Match vector of counts to phylogenetic tree |
| mcintosh_d | McIntosh dominance index D |
| mcintosh_e | McIntosh's evenness measure E |
| menhinick | Menhinick's richness index |
| minkowski | Minkowski distance |
| morisita | The Morisita index and Horn-Morisita index |
| richness | Richness or number of observed species |
| ruzicka | Ruzicka or weighted Jaccard distance |
| shannon | Shannon diversity and related measures |
| simpson | Simpson's index and related measures |
| strong | Strong's dominance index |
| unifrac | UniFrac distance |
| unifrac_components | Nestedness and turnover components of unweighted UniFrac... |
| weighted_kulczynski_second | Weighted Kulczynski distance |
