adjustBATCH-massFlowTemplate-method: adjustBATCH

Description Usage Arguments Value

Description

Development mode. Method adjusts retention time between two analytical batches using a set of features for which regions of integration (ROI) in mz, rt and into domains are specified by the user.

Usage

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## S4 method for signature 'massFlowTemplate'
adjustBATCH(object, out_dir = NULL,
  batch_end = NULL, batch_start = NULL, batch_next_metadata = NULL,
  batch_end_roi = NULL, batch_start_roi = NULL)

Arguments

object

massFlowTemplate class object.

out_dir

character specifying desired directory for output.

batch_end

character with filename of the last sample in batch No 1.

batch_start

character with filename of the first sample in batch No 2.

batch_next_metadata

character with path to metadata file for batch No 2.

batch_end_roi

character with path to csv file with regions of integrations for the last sample in batch No 1.

batch_start_roi

character with path to csv file with regions of integrations for the first sample in batch No 2.

Value

Method returns massFlowTemplate class object with updated template, such that rt of the features are adjusted according to the observed batch-change effect.


lauzikaite/massFlowR documentation built on Dec. 16, 2019, 6:01 p.m.