dimsum_stage_counts_to_fitness: dimsum_stage_counts_to_fitness

In lehner-lab/DiMSum: A pipeline for processing deep mutational scanning data

dimsum_stage_counts_to_fitness

Description

Estimate fitness of singles, doubles and silent AA substitution variants from DiMSum formatted output counts.

Usage

dimsum_stage_counts_to_fitness(
  dimsum_meta,
  fitness_outpath,
  report = TRUE,
  report_outpath = NULL,
  save_workspace = TRUE
)

Arguments

dimsum_meta	an experiment metadata object (required)
fitness_outpath	output path for saved objects (required)
report	whether or not to generate fitness summary plots (default: TRUE)
report_outpath	fitness report output path
save_workspace	whether or not to save the current workspace (default: TRUE)

Value

Nothing

lehner-lab/DiMSum documentation built on April 10, 2024, 4:15 a.m.