In lgatto/biocpkgs: Learning about Bioconductor packages

The biocpkgs package

The biocpkgspackage offers simple utilities to explore download data and dependencies of Bioconductor packages. See this vignette for a usecase.

Installation

library("devtools")
install_github("lgatto/biocpkgs")

Download statistics

library("biocpkgs")
dl <- pkg_download_data(c("MSnbase", "rpx"))
dl

library("ggplot2")
ggplot(dl, aes(x = Date, y = Nb_of_distinct_IPs,
                group = package, colour = package)) + geom_line()

Package dependencies

library("biocpkgs")
p <- c("MSnbase", "mzR") ## packages of interest
g <- pkg_dep_graph(pkgs = p) 
g
plot_pkg_dep_graph(g, pkgs = p, fs = 25)

lgatto/biocpkgs documentation built on May 13, 2019, 1:38 a.m.