lianos/ Data package for query/retrieval of species specific MSigDB versions

Provides functionality to retrieve msigdb collections. Primary data is provided for human entrez identifiers and is entirely provided via the functionality in msigdbr. This package provides a bit more versatility around identifier mapping to ensembl, and returning data to alternate species. This package is here to provide functionality to multiGSEA for MSigDB GeneSetDb retrieval (one might even say that it Enhances it(?)).

Getting started

Package details

Bioconductor views DifferentialExpression GeneExpression GeneSetEnrichment Pathways
LicenseApache License (>= 2.0)
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
lianos/ documentation built on June 16, 2020, 12:45 a.m.