README.md

In likelet/PlotAppForTBtools: Plot server for TBtools Output

PlotAppForTBtools V1.0.1

TBtools is a Toolset written by CJ-Chen for wet-lab biologists.It aims at facilitating some common and elaborate but simple molecular analysis tasks such as sequences extract, gene set functional enrichment It is easy to use and can run in all Operating system including Mac, Linux, Windows, which has Java run time environment higher than 1.6 . However, TBtools may mainly focus on data analysis procedure which make it difficult to plot fancy figures as well as being publishable. To cover the shortage, we implement an interactive plot websever using shiny programing env, and named TBploter

Click here to redirect to TRploter website. Screen shoot of TBploter

Function gallary

GOenriment ploter KEGGenrichment ploter

Install dependencies

To check the dependencies installed correctly, this command can help users to check the status of each installation

library("Packages for check")

Code for install dependencies R packages

cDep <- c("ggplot2","shiny","shinyBS","shinydashboard","ggthemes","DT")

###INSTALLED PACKAGES
#get installed list
inst <- packageStatus()$inst

#check and install DEPENDENCIES from CRAN
for(i in 1:length(cDep)){
  tag = which(inst$Package == cDep[i])
  if(length(tag)){
    remove.packages(cDep[i])
  }
  install.packages(cDep[i])
}

Install TBploter

To install the latest development build directly from GitHub, run this:

if (!require("devtools"))
  install.packages("devtools")
devtools::install_github("likelet/PlotAppForTBtools")

Update Information

2016-8-15

add tiff plot function

Designers:

Qi Zhao, [e-mail]

Developers:

Qi Zhao, [e-mail] Chenjie Chen,[e-mail]

Maintainer:

Qi Zhao Please feel free contact us.

Copyright

MIT license

Citation

during preparation

likelet/PlotAppForTBtools documentation built on May 21, 2019, 6:15 a.m.