This section presents the global expression similarity across multiple scRNA-seq experiments and also expression profiles similarity between cell populations using PCA and tSNE.
plotSampleSimilarity(sces)
r figRef("plotSamplesimilarity")
shows the global pairwise similarity between scRNA-seq experiments based on the average gene expression. The lower-left section shows the scatter plot, while the upper-right corner is the Pearson correlation coefficient between the two datasets.
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