Man pages for lkshrsch/iniflowcyts
Inference of interaction networks based on Lotka Volterra dynamics

addNoise_resAdd stochasticity to in silico generated data
assessmentAssess results from inference algorithm
compare_matrixCompare two interaction matrices
correctly_intervalized_estimatesCheck if confidence intervals of parameter estimates contain...
datadataset with 6 species
discreteFunction to discretize in silico generated data
draw_interaction_networkAdd stochasticity to in silico generated data
generate_dataGenerate random data for gLV fitting
generate_interaction_networkAdd stochasticity to in silico generated data
iniflowcyts-packageInference of interaction networks based on Lotka Volterra...
inSilico_bioGenerate in silico data
interaction_compareCompare interaction parameters
linear_RegressionParameter estimation of algebraic linear discrete gLV model
log_slope_lukEstimates the slope of subsequential measurements
modfit_pars_estimate_MLE_sequentialParameter estimation in sequential manner using sensitivity...
nlrResult of nonlinear regresssion
nonlinear_RegressionParameter estimation through gradient search of continuous...
obs2data_bioCorrectly format observations into input data for the model
parameter_matrixCorrectly format a parameter vector into a matrix as input...
plotGraphPlot interaction network
plot.Inference_runPlot function for objects returned by the inference function
plot.Sim_dataPlot function for objects returned by in silico data...
points.Sim_dataAdd points corresponding to the original observations on top...
predictionPredictions for parameterized models on new variable states
print.summary.Inference_runOutput summary description from an inference run
random_interaction_matrix_bioGenerate a random parameter matrix
regularized_linear_regressionCompute regularized parameter estimates for the linear model
R_squaredCoefficient of determination or Explained variance
sensitivityAnalysisCompute parameter correlations and multicollinearity for the...
slopeCalculate slope estimate for time series observations
solveLV_bioWrapper for numerical computation of solutions of the gLV...
solveLV_Sens_bioWrapper for numerical computation of solutions of the gLV...
summary.Inference_runSummary
lkshrsch/iniflowcyts documentation built on May 21, 2017, 1:42 p.m.