lme4 in pure R

blockLambdat | Create digonal block on transposed relative covariance factor |

lmerCorr.fit | lmer.fit function for the single correlation template model |

lmer.fit | Fit a mixed effects from raw matrices, vectors and grouping... |

mkLambdat | Make initial relative covariance factor from list of... |

mkLind | Make vector of indices giving the mapping from theta to... |

mkRanefRepresentation | Make random effects representation |

mkRanefStructures | Make random effects structures |

mkRanefStructuresCorr | Make random effects structures for the single correlation... |

mkTemplate | Make a single template for a relative covariance factor |

mkTemplates | Make list of templates for relative covariance factor |

mkTheta | Make initial theta from list of templates |

mkZt | Make transposed random-effects model matrix |

mkZtSection | Create a section of a transposed random effects model matrix |

pirls | Create an approximate deviance evaluation function for GLMMs... |

pls | Create linear mixed model deviance function |

plsform | Create the structure of a linear mixed model from... |

plsJSS | Linear mixed model deviance function as it appears in the... |

rLmer | Random lmer-type model simulation |

Zsection | Create a section of a transposed random effects model matrix |

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