API for lpantano/DEGreport
Report of DEG analysis

Global functions
.calccompletecorandplot Source code
.correct_fdr Source code
.createComb Source code
.effect_size Source code
.filterTable Source code
.generate_scatter_plot Source code
.get_contrast_name Source code
.get_counts Source code
.get_meta Source code
.getfactorcontassociationstatistics Source code
.guessComb Source code
.guessResults Source code
.guessShrunken Source code
.logger Source code
.merge_results Source code
.model Source code
.normalizeNames Source code
.numeric_effect_size Source code
.plot_benchmarking Source code
.plot_benchmarking_curve Source code
.plot_correlation Source code
.plot_raw Source code
.plot_shrunken Source code
.process Source code
.reduce_covariates Source code
.runpca Source code
.summarise_res Source code
.summary Source code
.supported Source code
.validate Source code
DEGSet Man page Source code
DEGSet-class Man page
DEGreport Man page
DEGreport-package Man page
as.DEGSet Man page
as.DEGSet,DESeqResults-method Man page
as.DEGSet,TopTags-method Man page
as.DEGSet,data.frame-method Man page
createReport Man page Source code
deg Man page
deg,DEGSet-method Man page
degBI Source code
degBIcmd Source code
degCheckFactors Man page Source code
degClean Source code
degColors Man page Source code
degComb Source code
degComps Man page Source code
degCorCov Man page
degCorrect Man page
degCorrect,DEGSet-method Man page
degCovariates Man page Source code
degDefault Man page
degDefault,DEGSet-method Man page
degFC Source code
degFilter Man page Source code
degMA Man page Source code
degMB Man page Source code
degMDS Man page
degMV Man page Source code
degMean Man page Source code
degMerge Man page
degNcomb Source code
degObj Man page Source code
degPCA Man page
degPR Source code
degPatterns Man page
degPlot Man page Source code
degPlotCluster Man page Source code
degPlotWide Man page Source code
degQC Man page Source code
degRank Source code
degResults Man page
degSignature Man page Source code
degSummary Man page Source code
degVB Man page Source code
degVar Man page Source code
degVolcano Man page Source code
figurebyexp Source code
figurebyvar Source code
figurepvaluebyvarexp Source code
fmt Source code
geneInfo Man page
geom_cor Man page Source code
humanGender Man page
significants Man page
significants,DEGSet-method Man page
significants,DESeqResults-method Man page
significants,TopTags-method Man page
significants,list-method Man page
lpantano/DEGreport documentation built on Sept. 16, 2019, 1:34 a.m.