API for lpantano/DEGreport
Report of DEG analysis

Global functions
DEGSet Man page Source code
DEGSet-class Man page
DEGSetFromDESeq2 Man page
DEGSetFromDESeq2,DESeqResults-method Man page
DEGSetFromEdgeR Man page
DEGSetFromEdgeR,TopTags-method Man page
DEGreport Man page
DEGreport-package Man page
calccompletecorandplot Source code
convertIDs Source code
createComb Source code
createReport Man page Source code
deg Man page
deg,DEGSet-method Man page
degBI Source code
degBIcmd Source code
degCheckFactors Man page Source code
degClean Source code
degComb Source code
degComps Man page Source code
degCorCov Man page Source code
degCovariates Man page Source code
degDefault Man page
degDefault,DEGSet-method Man page
degFC Source code
degFilter Man page Source code
degMB Man page Source code
degMDS Man page Source code
degMV Man page Source code
degMean Man page Source code
degMerge Man page Source code
degNcomb Source code
degObj Man page Source code
degPCA Man page Source code
degPR Source code
degPatterns Man page Source code
degPlot Man page Source code
degPlotWide Man page Source code
degQC Man page Source code
degRank Source code
degResults Man page Source code
degSignature Man page Source code
degSummary Man page Source code
degVB Man page Source code
degVar Man page Source code
degVolcano Man page Source code
figurebyexp Source code
figurebyvar Source code
figurepvaluebyvarexp Source code
filter Source code
fmt Source code
geneInfo Man page
generate_scatter_plot Source code
get_counts Source code
get_features Source code
get_meta Source code
getfactorcontassociationstatistics Source code
group_metadata Source code
guessComb Source code
guessResults Source code
guessShrunken Source code
humanGender Man page
logger Source code
make_clusters Source code
make_concensus_cluster Source code
median_per_cluster Source code
merge_results Source code
normalizeNames Source code
ntegrate Source code
pca_loadings Source code
plotMA Man page Source code
plotMA,DEGSet-method Man page
plot_base Source code
plot_cluster Source code
plot_correlation Source code
plot_raw Source code
plot_shrunken Source code
reduce Source code
run_cluster_profiler Source code
runpca Source code
save_file Source code
scale Source code
select_concensus_genes Source code
select_genes Source code
significants Man page
significants,DEGSet-method Man page
significants,DESeqResults-method Man page
significants,TopTags-method Man page
summarize_scale Source code
summary Source code
table_w_fc Source code
lpantano/DEGreport documentation built on Nov. 30, 2017, 2:24 a.m.