Files in lpantano/DEGreport
Report of DEG analysis

.Rbuildignore
.gitignore
.travis.yml
DEGreport.Rproj
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/AllClasses.R R/AllGenerics.R R/AllMethods.R R/DEGreport-package.R R/clustering.R R/covariate.R R/geneInfo.R R/genePlots.R R/geom_cor.R R/humanGender-data.R R/methods.R R/report.R R/results.R R/signature.R R/volcanoPlot.R R/zzz.R README.md
_pkgdown.yml
data/datalist
data/geneInfo.rda
data/humanGender.rda
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/articles/DEGreport.R
docs/articles/DEGreport.Rnw
docs/articles/DEGreport.html
docs/articles/DEGreport.tex
docs/articles/DEGreport_examples.html
docs/articles/DEGreport_examples_files/figure-html/check-factor-1.png
docs/articles/DEGreport_examples_files/figure-html/corcov-1.png
docs/articles/DEGreport_examples_files/figure-html/cov-1.png
docs/articles/DEGreport_examples_files/figure-html/deseq2-1.png
docs/articles/DEGreport_examples_files/figure-html/deseq2-2.png
docs/articles/DEGreport_examples_files/figure-html/deseq2-3.png
docs/articles/DEGreport_examples_files/figure-html/deseq2-gene-plot-wide-1.png
docs/articles/DEGreport_examples_files/figure-html/deseq2-gene-plots-1.png
docs/articles/DEGreport_examples_files/figure-html/deseq2-volcano-1.png
docs/articles/DEGreport_examples_files/figure-html/markers-1.png
docs/articles/DEGreport_examples_files/figure-html/pattern-1.png
docs/articles/DEGreport_examples_files/figure-html/plotMA-1.png
docs/articles/DEGreport_examples_files/figure-html/plotMA-cor-1.png
docs/articles/DEGreport_examples_files/figure-html/plotMA-raw-1.png
docs/articles/DEGreport_examples_files/figure-html/qc-1.png
docs/articles/DEGreport_files/figure-html/check-factor-1.png
docs/articles/DEGreport_files/figure-html/corcov-1.png
docs/articles/DEGreport_files/figure-html/cov-1.png
docs/articles/DEGreport_files/figure-html/degColors-1.png
docs/articles/DEGreport_files/figure-html/degColors-2.png
docs/articles/DEGreport_files/figure-html/deseq2-1.png
docs/articles/DEGreport_files/figure-html/deseq2-2.png
docs/articles/DEGreport_files/figure-html/deseq2-3.png
docs/articles/DEGreport_files/figure-html/deseq2-gene-plot-wide-1.png
docs/articles/DEGreport_files/figure-html/deseq2-gene-plots-1.png
docs/articles/DEGreport_files/figure-html/deseq2-volcano-1.png
docs/articles/DEGreport_files/figure-html/markers-1.png
docs/articles/DEGreport_files/figure-html/pattern-1.png
docs/articles/DEGreport_files/figure-html/plotMA-1.png
docs/articles/DEGreport_files/figure-html/plotMA-cor-1.png
docs/articles/DEGreport_files/figure-html/plotMA-raw-1.png
docs/articles/DEGreport_files/figure-html/qc-1.png
docs/articles/figure/chunk-covariates-1.pdf docs/articles/figure/chunk-covariates-2.pdf docs/articles/figure/chunk-size-factor-1.pdf
docs/articles/index.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/DEGSet.html
docs/reference/DEGreport-deprecated.html
docs/reference/createReport.html
docs/reference/deg.html
docs/reference/degCheckFactors-1.png
docs/reference/degCheckFactors-2.png
docs/reference/degCheckFactors-3.png
docs/reference/degCheckFactors-4.png
docs/reference/degCheckFactors-5.png
docs/reference/degCheckFactors-6.png
docs/reference/degCheckFactors.html
docs/reference/degColors-1.png
docs/reference/degColors-2.png
docs/reference/degColors.html
docs/reference/degComps.html
docs/reference/degCorCov-1.png
docs/reference/degCorCov-2.png
docs/reference/degCorCov-3.png
docs/reference/degCorCov-4.png
docs/reference/degCorCov-5.png
docs/reference/degCorCov-6.png
docs/reference/degCorCov.html
docs/reference/degCovariates-1.png
docs/reference/degCovariates-10.png
docs/reference/degCovariates-11.png
docs/reference/degCovariates-12.png
docs/reference/degCovariates-13.png
docs/reference/degCovariates-14.png
docs/reference/degCovariates-15.png
docs/reference/degCovariates-16.png
docs/reference/degCovariates-17.png
docs/reference/degCovariates-18.png
docs/reference/degCovariates-2.png
docs/reference/degCovariates-3.png
docs/reference/degCovariates-4.png
docs/reference/degCovariates-5.png
docs/reference/degCovariates-6.png
docs/reference/degCovariates-7.png
docs/reference/degCovariates-8.png
docs/reference/degCovariates-9.png
docs/reference/degCovariates.html
docs/reference/degDefault.html
docs/reference/degFilter.html
docs/reference/degMA-1.png
docs/reference/degMA.html
docs/reference/degMB-1.png
docs/reference/degMB-2.png
docs/reference/degMB-3.png
docs/reference/degMB-4.png
docs/reference/degMB-5.png
docs/reference/degMB-6.png
docs/reference/degMB.html
docs/reference/degMDS-1.png
docs/reference/degMDS-2.png
docs/reference/degMDS-3.png
docs/reference/degMDS-4.png
docs/reference/degMDS-5.png
docs/reference/degMDS-6.png
docs/reference/degMDS.html
docs/reference/degMV-1.png
docs/reference/degMV-2.png
docs/reference/degMV-3.png
docs/reference/degMV-4.png
docs/reference/degMV-5.png
docs/reference/degMV-6.png
docs/reference/degMV.html
docs/reference/degMean-1.png
docs/reference/degMean-2.png
docs/reference/degMean-3.png
docs/reference/degMean-4.png
docs/reference/degMean-5.png
docs/reference/degMean-6.png
docs/reference/degMean.html
docs/reference/degMerge.html
docs/reference/degObj.html
docs/reference/degPCA-1.png
docs/reference/degPCA-2.png
docs/reference/degPCA-3.png
docs/reference/degPCA-4.png
docs/reference/degPCA-5.png
docs/reference/degPCA-6.png
docs/reference/degPCA.html
docs/reference/degPatterns-1.png
docs/reference/degPatterns-2.png
docs/reference/degPatterns-3.png
docs/reference/degPatterns-4.png
docs/reference/degPatterns-5.png
docs/reference/degPatterns.html
docs/reference/degPlot-1.png
docs/reference/degPlot-10.png
docs/reference/degPlot-11.png
docs/reference/degPlot-12.png
docs/reference/degPlot-13.png
docs/reference/degPlot-14.png
docs/reference/degPlot-15.png
docs/reference/degPlot-2.png
docs/reference/degPlot-3.png
docs/reference/degPlot-4.png
docs/reference/degPlot-5.png
docs/reference/degPlot-6.png
docs/reference/degPlot-7.png
docs/reference/degPlot-8.png
docs/reference/degPlot-9.png
docs/reference/degPlot.html
docs/reference/degPlotCluster-1.png
docs/reference/degPlotCluster-2.png
docs/reference/degPlotCluster-3.png
docs/reference/degPlotCluster.html
docs/reference/degPlotWide-1.png
docs/reference/degPlotWide-2.png
docs/reference/degPlotWide-3.png
docs/reference/degPlotWide-4.png
docs/reference/degPlotWide-5.png
docs/reference/degPlotWide-6.png
docs/reference/degPlotWide.html
docs/reference/degQC-1.png
docs/reference/degQC-2.png
docs/reference/degQC-3.png
docs/reference/degQC-4.png
docs/reference/degQC-5.png
docs/reference/degQC.html
docs/reference/degResults-1.png
docs/reference/degResults-10.png
docs/reference/degResults-11.png
docs/reference/degResults-12.png
docs/reference/degResults-2.png
docs/reference/degResults-3.png
docs/reference/degResults-4.png
docs/reference/degResults-5.png
docs/reference/degResults-6.png
docs/reference/degResults-7.png
docs/reference/degResults-8.png
docs/reference/degResults-9.png
docs/reference/degResults.html
docs/reference/degSignature-1.png
docs/reference/degSignature-2.png
docs/reference/degSignature-3.png
docs/reference/degSignature-4.png
docs/reference/degSignature-5.png
docs/reference/degSignature-6.png
docs/reference/degSignature.html
docs/reference/degSummary.html
docs/reference/degVB-1.png
docs/reference/degVB-2.png
docs/reference/degVB-3.png
docs/reference/degVB-4.png
docs/reference/degVB-5.png
docs/reference/degVB-6.png
docs/reference/degVB.html
docs/reference/degVar-1.png
docs/reference/degVar-2.png
docs/reference/degVar-3.png
docs/reference/degVar-4.png
docs/reference/degVar-5.png
docs/reference/degVar-6.png
docs/reference/degVar.html
docs/reference/degVolcano-1.png
docs/reference/degVolcano-2.png
docs/reference/degVolcano-3.png
docs/reference/degVolcano-4.png
docs/reference/degVolcano-5.png
docs/reference/degVolcano-6.png
docs/reference/degVolcano.html
docs/reference/geneInfo.html
docs/reference/geom_cor-1.png
docs/reference/geom_cor-2.png
docs/reference/geom_cor-3.png
docs/reference/geom_cor.html
docs/reference/humanGender.html
docs/reference/index.html
docs/reference/plotMA-1.png
docs/reference/plotMA-2.png
docs/reference/plotMA-3.png
docs/reference/plotMA-4.png
docs/reference/plotMA-5.png
docs/reference/plotMA-6.png
docs/reference/plotMA.html
docs/reference/significants.html
docs/sitemap.xml
inst/sticker/degreport.png
inst/sticker/flag.jpg
inst/sticker/flag_hex.png
inst/sticker/sticker.R man/DEGSet.Rd man/DEGreport-deprecated.Rd man/createReport.Rd man/deg.Rd man/degCheckFactors.Rd man/degColors.Rd man/degComps.Rd man/degCorCov.Rd man/degCovariates.Rd man/degDefault.Rd man/degFilter.Rd man/degMA.Rd man/degMB.Rd man/degMDS.Rd man/degMV.Rd man/degMean.Rd man/degMerge.Rd man/degObj.Rd man/degPCA.Rd man/degPatterns.Rd man/degPlot.Rd man/degPlotCluster.Rd man/degPlotWide.Rd man/degQC.Rd man/degResults.Rd man/degSignature.Rd man/degSummary.Rd man/degVB.Rd man/degVar.Rd man/degVolcano.Rd man/geneInfo.Rd man/geom_cor.Rd man/humanGender.Rd man/significants.Rd tests/testthat.R tests/testthat/test_class.R tests/testthat/test_cluster.R tests/testthat/test_plots.R tests/testthat/test_results.R vignettes/DEGreport.Rmd
lpantano/DEGreport documentation built on Sept. 16, 2019, 1:34 a.m.