Files in lpantano/DEGreport
Report of DEG analysis

.Rbuildignore
.gitignore
.travis.yml
DEGreport.Rproj
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/AllClasses.R R/AllGenerics.R R/AllMethods.R R/DEGreport-package.R R/clustering.R R/covariate.R R/geneInfo.R R/genePlots.R R/geom_cor.R R/humanGender-data.R R/methods.R R/report.R R/results.R R/signature.R R/volcanoPlot.R R/zzz.R README.md
_pkgdown.yml
batchx/deg-patterns/.gitignore
batchx/deg-patterns/Dockerfile
batchx/deg-patterns/deg-patterns.py
batchx/deg-patterns/install.deg-patterns.R batchx/deg-patterns/install.deg-patterns2.R
batchx/deg-patterns/manifest/example1.png
batchx/deg-patterns/manifest/example2.png
batchx/deg-patterns/manifest/manifest.json
batchx/deg-patterns/manifest/picture.png
batchx/deg-patterns/manifest/readme.md batchx/deg-patterns/run.deg-patterns.R
data/datalist
data/geneInfo.rda
data/humanGender.rda
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/articles/DEGreport.R
docs/articles/DEGreport.Rnw
docs/articles/DEGreport.html
docs/articles/DEGreport.tex
docs/articles/DEGreport_examples.html
docs/articles/DEGreport_examples_files/figure-html/check-factor-1.png
docs/articles/DEGreport_examples_files/figure-html/corcov-1.png
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docs/articles/DEGreport_examples_files/figure-html/deseq2-gene-plot-wide-1.png
docs/articles/DEGreport_examples_files/figure-html/deseq2-gene-plots-1.png
docs/articles/DEGreport_examples_files/figure-html/deseq2-volcano-1.png
docs/articles/DEGreport_examples_files/figure-html/markers-1.png
docs/articles/DEGreport_examples_files/figure-html/pattern-1.png
docs/articles/DEGreport_examples_files/figure-html/plotMA-1.png
docs/articles/DEGreport_examples_files/figure-html/plotMA-cor-1.png
docs/articles/DEGreport_examples_files/figure-html/plotMA-raw-1.png
docs/articles/DEGreport_examples_files/figure-html/qc-1.png
docs/articles/DEGreport_files/figure-html/check-factor-1.png
docs/articles/DEGreport_files/figure-html/corcov-1.png
docs/articles/DEGreport_files/figure-html/cov-1.png
docs/articles/DEGreport_files/figure-html/degColors-1.png
docs/articles/DEGreport_files/figure-html/degColors-2.png
docs/articles/DEGreport_files/figure-html/deseq2-1.png
docs/articles/DEGreport_files/figure-html/deseq2-2.png
docs/articles/DEGreport_files/figure-html/deseq2-3.png
docs/articles/DEGreport_files/figure-html/deseq2-gene-plot-wide-1.png
docs/articles/DEGreport_files/figure-html/deseq2-gene-plots-1.png
docs/articles/DEGreport_files/figure-html/deseq2-volcano-1.png
docs/articles/DEGreport_files/figure-html/markers-1.png
docs/articles/DEGreport_files/figure-html/pattern-1.png
docs/articles/DEGreport_files/figure-html/plotMA-1.png
docs/articles/DEGreport_files/figure-html/plotMA-cor-1.png
docs/articles/DEGreport_files/figure-html/plotMA-raw-1.png
docs/articles/DEGreport_files/figure-html/qc-1.png
docs/articles/figure/chunk-covariates-1.pdf docs/articles/figure/chunk-covariates-2.pdf docs/articles/figure/chunk-size-factor-1.pdf
docs/articles/index.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/DEGSet.html
docs/reference/DEGreport-deprecated.html
docs/reference/createReport.html
docs/reference/deg.html
docs/reference/degCheckFactors-1.png
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docs/reference/degComps.html
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docs/reference/degVolcano.html
docs/reference/geneInfo.html
docs/reference/geom_cor-1.png
docs/reference/geom_cor-2.png
docs/reference/geom_cor-3.png
docs/reference/geom_cor.html
docs/reference/humanGender.html
docs/reference/index.html
docs/reference/plotMA-1.png
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docs/reference/plotMA.html
docs/reference/significants.html
docs/sitemap.xml
inst/sticker/degreport.png
inst/sticker/flag.jpg
inst/sticker/flag_hex.png
inst/sticker/sticker.R man/DEGSet.Rd man/DEGreport-deprecated.Rd man/createReport.Rd man/deg.Rd man/degCheckFactors.Rd man/degColors.Rd man/degComps.Rd man/degCorCov.Rd man/degCovariates.Rd man/degDefault.Rd man/degFilter.Rd man/degMA.Rd man/degMB.Rd man/degMDS.Rd man/degMV.Rd man/degMean.Rd man/degMerge.Rd man/degObj.Rd man/degPCA.Rd man/degPatterns.Rd man/degPlot.Rd man/degPlotCluster.Rd man/degPlotWide.Rd man/degQC.Rd man/degResults.Rd man/degSignature.Rd man/degSummary.Rd man/degVB.Rd man/degVar.Rd man/degVolcano.Rd man/geneInfo.Rd man/geom_cor.Rd man/humanGender.Rd man/significants.Rd tests/testthat.R tests/testthat/test_class.R tests/testthat/test_cluster.R tests/testthat/test_plots.R tests/testthat/test_results.R vignettes/DEGreport.Rmd
lpantano/DEGreport documentation built on Feb. 28, 2024, 12:01 a.m.