API for lpantano/isomiRs
Analyze isomiRs and miRNAs from small RNA-seq

Global functions
IsoCountsFromMatrix Source code
IsomirDataSeq Man page Source code
IsomirDataSeq-class Man page
IsomirDataSeqFromFiles Man page Source code
IsomirDataSeqFromRawData Man page Source code
R2PermutationVector Source code
R2RefinedPermutationVector Source code
apply_median Source code
change_seq Source code
clean_low_rate_changes Source code
clean_noise Source code
cluster_exp Source code
collapse_mirs Source code
convert_names Source code
convert_to_new_version Source code
cor_matrix Source code
counts Man page
counts,IsomirDataSeq-method Man page
counts.IsomirDataSeq Man page Source code
counts<-,IsomirDataSeq,matrix-method Man page
dat286.long Man page
design Man page
design,IsomirDataSeq-method Man page
design.IsomirDataSeq Source code
design<-,IsomirDataSeq,formula-method Man page
detect_gene_symbol Source code
ego Man page
filter_N_add Source code
filter_by_cov Source code
filter_table Source code
findTargets Man page Source code
fix_term_name Source code
gene_ex_rse Man page
isoCounts Man page Source code
isoDE Man page Source code
isoNetwork Man page Source code
isoNorm Man page Source code
isoPLSDA Man page Source code
isoPLSDAplot Man page Source code
isoPlot Man page Source code
isoPlotNet Man page Source code
isoPlotPosition Man page Source code
isoSelect Man page
isoSelect,IsomirDataSeq-method Man page
isoSelect.IsomirDataSeq Man page Source code
isoTop Man page Source code
isomiRs Man page
isomiRs-package Man page
ma_ex Man page
make_uid Source code
median_by_group Source code
mirData Man page
mirTritation Man page
mirna2targetscan Man page Source code
mirna_ex_rse Man page
no_na Source code
pairsMatrix Source code
plot_all_iso Source code
plot_profiles Source code
predict_correlate_mirna_targets Source code
put_header Source code
reduce_mirna Source code
s_mapping_needed Source code
scale Source code
somir_general_type Source code
somir_position Source code
subs_position Source code
summary_mirna Source code
updateIsomirDataSeq Man page Source code
viz_mirna_gene_enrichment Source code
lpantano/isomiRs documentation built on Dec. 5, 2018, 2:10 p.m.