R/vFun_makeInset.R

In lucidif/HiCeekR: GUI for Hi-C data analysis

makeInset<-function(matrixPath,
                    outPath,
                    chromosome,
                    binSize,
                    internal=FALSE,
                    fixBin=TRUE
                    ){

    tablePath<-matrixPath#"/home/lucio/Dropbox/juiceMatrix/RaoAndHuntley_2014/chr14_50kb.RAWobserved"
    savePath<-outPath#"/home/lucio/rPrj/1.HiCeekR_wd/HiCeekR_Projects/rao_2014_K562/Analysis_none_50000/Binning/"
    #saveNorm<-#"/home/lucio/rPrj/1.HiCeekR_wd/HiCeekR_Projects/rao_2014_K562/Analysis_none_50000/Normalization/"
    #chromosome<- 'chr14'
    #binSize<-50000



}